useDynLib(Rtreemix) import(Biobase) import(methods) import(graph) importFrom("Hmisc", "rcorr") ##import(Rgraphviz) ##importFrom("graphics", "plot") ## Classes to be exported exportClasses(RtreemixData, RtreemixModel, RtreemixSim, RtreemixStats, RtreemixGPS) ## Methods to be exported exportMethods(initialize, print, show, Sample, Events, Patients, Description, sampleSize, eventsNum, ##RtreemixData "Events<-", "Patients<-", "Description<-", ##RtreemixData Weights, "Weights<-", WeightsCI, Resp, CompleteMat, Star, Trees, numTrees, getTree, getData, plot, ## RtreemixModel Model, LogLikelihoods, WLikelihoods, getResp, ## RtreemixStats SamplingMode, SamplingParam, GPS, gpsCI, ## RtreemixGPS SimPatterns, SamplingTimes, WaitingTimes, getModel, noDraws, ## RtreemixSim fit, bootstrap, likelihoods, gps, confIntGPS, sim, generate, distribution ## other methods ) ## Functions to be exported export(Pval.dist, kullback.leibler, L1.dist, cosin.dist, L2.norm, euclidian.dist, rank.cor.dist, ## similarity measures for vectors get.tree.levels, comp.models, comp.models.levels, comp.trees, comp.trees.levels, ## similarity measures for tree topologies stability.sim ## stability analysis function )