1. Rqc
  2. Graph
Graph of Rqc
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • | *
  • | |\
  • | |/
  • |/|
  • * |
  • * |
  • | *
  • |/
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • | *
  • | *
  • * |
  • | *
  • |/
  • *
  • *
  • *
  • | *
  • |/
  • *
  • | *
  • * |
  • | *
  • * |
  • * |
  • | *
  • |/
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • | *
  • * |
  • * |
  • | *
  • |/
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • | *
  • |/
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • beb1258 (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_20 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2024-10-29 09:56:33 -0400;
  • 956d2d1 (origin/RELEASE_3_20, RELEASE_3_20) bump x.y.z version to even y prior to creation of RELEASE_3_20 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2024-10-29 09:56:33 -0400;
  • 7237106 bump x.y.z version to odd y following creation of RELEASE_3_19 branch by J Wokaty <jwokaty@users.noreply.github.com> 2024-04-30 10:40:19 -0400;
  • 68a2092 (origin/RELEASE_3_19, RELEASE_3_19) bump x.y.z version to even y prior to creation of RELEASE_3_19 branch by J Wokaty <jwokaty@users.noreply.github.com> 2024-04-30 10:40:19 -0400;
  • 51151c3 bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 10:40:04 -0400;
  • 500f192 (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 10:40:04 -0400;
  • 08e563e bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:36:13 -0400;
  • 3339609 (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:36:13 -0400;
  • 324a385 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:10:42 -0400;
  • 1691219 (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:10:42 -0400;
  • 0f5fb75 bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:22:41 +0000;
  • 28967ba (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:22:41 +0000;
  • e877ffc bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:17:25 +0000;
  • 2f449e1 (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:17:25 +0000;
  • cf60464 Fix knitr issue by Welliton Souza <well309@gmail.com> 2021-07-28 20:26:44 -0300;
  • 34150ad bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:09:26 +0000;
  • 1c1c91a (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:09:26 +0000;
  • 21b5189 bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:00:42 -0400;
  • bf3c098 (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:00:42 -0400;
  • d0c3a55 bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:45:07 +0000;
  • 021b71a (origin/RELEASE_3_11, RELEASE_3_11) bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:45:07 +0000;
  • 05d5f1c bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:38:36 -0400;
  • dd3ec8b (origin/RELEASE_3_10, RELEASE_3_10) bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:09:06 -0400;
  • 2ae9e77 bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 12:11:56 -0400;
  • d8a92f7 (origin/RELEASE_3_9, RELEASE_3_9) bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 11:53:50 -0400;
  • b6bcc59 Fix imports; fix bpstop call by Welliton Souza <well309@gmail.com> 2019-03-01 19:32:02 +0000;
  • 7f64aad Update version bump by Welliton Souza <well309@gmail.com> 2018-11-02 17:26:09 -0300;
  • eb418ff (origin/RELEASE_3_8, RELEASE_3_8) Update version bump by Welliton Souza <well309@gmail.com> 2018-11-02 17:24:35 -0300;
  • 171cdf0 Fix CITATION by Welliton Souza <well309@gmail.com> 2018-11-02 17:22:39 -0300;
  • 9467e31 Update version bump by Welliton Souza <well309@gmail.com> 2018-10-31 17:19:07 -0300;
  • 43842ef Update version bump by Welliton Souza <well309@gmail.com> 2018-10-31 00:50:39 -0300;
  • 68341ad Added CITATION file by Welliton Souza <well309@gmail.com> 2018-10-31 00:40:20 -0300;
  • 43ce1d3 bump x.y.z versions to odd y after creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:54:33 -0400;
  • a800ffd bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:41:56 -0400;
  • 5e73312 replace BiocInstaller biocLite mentions with BiocManager by LiNk-NY <mramos09@gmail.com> 2018-08-30 13:55:41 -0400;
  • 0aac6a1 bump x.y.z versions to odd y after creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:41:40 -0400;
  • 029044f (origin/RELEASE_3_7, RELEASE_3_7) bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:35:35 -0400;
  • 98fa468 The path() generic has moved from Rsamtools to BiocGenerics. Import it from this new location. by Hervé Pagès <hpages@fredhutch.org> 2017-12-20 12:46:45 -0800;
  • 1d82f31 bump x.y.z versions to odd y after creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:53:52 -0400;
  • 7abec5a (origin/RELEASE_3_6, RELEASE_3_6) bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:40:45 -0400;
  • c11a592 Updated NEWS file by Welliton Souza <well309@gmail.com> 2017-10-13 14:03:07 -0300;
  • 361f50f Using BiocStyle::html_document by Welliton Souza <well309@gmail.com> 2017-10-11 14:15:41 -0300;
  • 65a3b9c Added BugReports URL; bump version by Welliton Souza <well309@gmail.com> 2017-08-22 14:21:42 -0300;
  • 9132a0e Added Travis and Codecov badges to README by Welliton Souza <well309@gmail.com> 2017-08-22 13:59:58 -0300;
  • 35aba6d Added Travi CI file by Welliton Souza <well309@gmail.com> 2017-08-22 13:13:46 -0300;
  • 5326895 Fix NAMESPACE by Welliton Souza <well309@gmail.com> 2017-08-22 13:13:28 -0300;
  • 47c6432 Updated vignette to BiocStyle html_document2 by Welliton Souza <well309@gmail.com> 2017-08-22 12:55:07 -0300;
  • 414cb9a Updated Rcpp exports files by Welliton Souza <well309@gmail.com> 2017-08-21 17:16:40 -0300;
  • d1429c2 Report template uses R default graphic device by Welliton Souza <well309@gmail.com> 2017-07-12 17:47:07 +0000;
  • 323186b Fix bug temp fig dir in Windows by Welliton Souza <well309@gmail.com> 2017-07-06 19:54:32 +0000;
  • 0e4387a (origin/RELEASE_3_5, RELEASE_3_5) Report template uses R default graphic device by Welliton Souza <well309@gmail.com> 2017-07-12 17:47:07 +0000;
  • 561503f Fix bug temp fig dir in Windows by Welliton Souza <well309@gmail.com> 2017-07-06 19:54:32 +0000;
  • 4325df5 bump x.y.z versions to odd y after creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:50:57 +0000;
  • 598b093 Creating branch for BioC 3.5 release by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:45:44 +0000;
  • 8ca473c bump x.y.z versions to even y prior to creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:25:24 +0000;
  • aba48c0 The rqcQA function always returns list by Welliton Souza <well309@gmail.com> 2017-03-28 14:12:40 +0000;
  • c8d12c0 bump x.y.z versions to odd 'y' after creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:10:43 +0000;
  • 4091fa4 (origin/RELEASE_3_4, RELEASE_3_4) Creating branch for BioC 3.4 release by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:00:47 +0000;
  • 67cfd26 bump x.y.z versions to even 'y' prior to creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 18:45:06 +0000;
  • 977bfff (origin/RELEASE_3_3, RELEASE_3_3) Version bump to trigger package rebuilding now that purl()'ing issue has been correctly identified. knitr does not create purl()'ed (Stangle equivalent) .R files if _R_CHECK_TIMINGS_ is set, which the build system was setting. Now it's not set, so these .R files are now created. See https://github.com/yihui/knitr/issues/1212 for more. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-15 20:18:19 +0000;
  • 58d474d Version bump to trigger package rebuilding now that purl()'ing issue has been correctly identified. knitr does not create purl()'ed (Stangle equivalent) .R files if _R_CHECK_TIMINGS_ is set, which the build system was setting. Now it's not set, so these .R files are now created. See https://github.com/yihui/knitr/issues/1212 for more. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-15 20:14:22 +0000;
  • 265188a Bump version of all packages that use knitr for vignettes. This is because of an issue (now fixed) in knitr which failed to create purl()'ed R files from vignette sources and include them in the package. This version bump will cause these packages to propagate with those R files included. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-11 23:15:25 +0000;
  • 116f6c2 Bump version of all packages that use knitr for vignettes. This is because of an issue (now fixed) in knitr which failed to create purl()'ed R files from vignette sources and include them in the package. This version bump will cause these packages to propagate with those R files included. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-11 23:05:31 +0000;
  • 09e1adf bump version after creating 3.3 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:30:44 +0000;
  • 3e0ee59 Creating branch for BioC 3.3 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:26:31 +0000;
  • cadba78 Bump versions prior to creation of 3.3 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:20:18 +0000;
  • 4293554 Added total reads of FASTQ file by Welliton Souza <well309@gmail.com> 2016-05-03 16:48:21 +0000;
  • 062dec2 Update SVN repository by Welliton Souza <well309@gmail.com> 2016-04-25 17:52:21 +0000;
  • 3e5a3d4 Fix NAMESPACE by Welliton Souza <well309@gmail.com> 2016-04-25 14:27:52 +0000;
  • aa86758 Fixed multiple threads/workers issue. by Welliton Souza <well309@gmail.com> 2016-04-25 14:27:45 +0000;
  • dd0c85c Updated package version by Welliton Souza <well309@gmail.com> 2016-04-25 14:27:37 +0000;
  • 8c53186 testing destination by Welliton Souza <well309@gmail.com> 2016-04-25 12:59:25 +0000;
  • e2a0c04 Fix merge by Welliton Souza <well309@gmail.com> 2016-03-28 13:28:02 +0000;
  • e209cd4 Merge branch 'master' into devel by Welliton Souza <well309@gmail.com> 2016-03-28 13:15:15 +0000;
  • 508b881 fixing bugs due to ggplot2 update by Benilton Carvalho <bcarvalh@jhsph.edu> 2016-02-04 17:54:04 +0000;
  • 2bc3936 (origin/RELEASE_3_2, RELEASE_3_2) fixing bugs due to ggplot2 update by Benilton Carvalho <bcarvalh@jhsph.edu> 2016-02-04 17:53:44 +0000;
  • 4f53f8e ggplot2 add x/y intercept by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-02-02 23:48:53 +0000;
  • 2c711dc Bumped version number of all packages after creation of 3.2 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:59:53 +0000;
  • a5b31e4 Creating branch for BioC 3.2 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:57:33 +0000;
  • 14498e5 Bumped versions of all packages prior to creating 3.2 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:36:05 +0000;
  • ec78ebd only browseURL() if (interactive()) to work around issue described here: https://stat.ethz.ch/pipermail/r-help/2015-August/431411.html by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-08-18 20:15:30 +0000;
  • 008b07e Merge branch 'master' of https://github.com/labbcb/Rqc by Benilton Carvalho <bcarvalh@jhsph.edu> 2015-08-12 19:45:27 +0000;
  • 72032ee removed test by Benilton Carvalho <bcarvalh@jhsph.edu> 2015-08-12 19:32:57 +0000;
  • 3d6e7bb testing destination by Benilton Carvalho <bcarvalh@jhsph.edu> 2015-08-12 19:32:43 +0000;
  • 1e05e09 Commit made by the Bioconductor Git-SVN bridge. by Benilton Carvalho <bcarvalh@jhsph.edu> 2015-06-15 19:23:18 +0000;
  • 3fd0042 Bump versions in trunk after creation of 3.1 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-04-16 20:02:44 +0000;
  • 604b8df (origin/RELEASE_3_1, RELEASE_3_1) Creating branch for BioC 3.1 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-04-16 20:00:01 +0000;
  • 8cef4f3 Bump versions prior to creating 3.1 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-04-16 19:42:01 +0000;
  • e579112 Commit made by the Bioconductor Git-SVN bridge. by Benilton Carvalho <bcarvalh@jhsph.edu> 2015-04-10 13:49:16 +0000;
  • ea0778b Commit made by the Bioconductor Git-SVN bridge. by Benilton Carvalho <bcarvalh@jhsph.edu> 2015-04-09 19:48:51 +0000;
  • f4702cc Commit made by the Bioconductor Git-SVN bridge. by Benilton Carvalho <bcarvalh@jhsph.edu> 2015-04-09 16:20:59 +0000;
  • 4e0ef21 Commit made by the Bioconductor Git-SVN bridge. by Benilton Carvalho <bcarvalh@jhsph.edu> 2015-04-08 13:24:48 +0000;
  • 4b4c873 Commit made by the Bioconductor Git-SVN bridge. Consists of 2 commits. by Benilton Carvalho <bcarvalh@jhsph.edu> 2015-02-11 19:34:40 +0000;
  • 967e8cd Commit made by the Bioconductor Git-SVN bridge. Consists of 4 commits. by Benilton Carvalho <bcarvalh@jhsph.edu> 2015-02-02 12:44:05 +0000;
  • 6e2c559 Commit made by the Bioconductor Git-SVN bridge. Consists of 1 commit. by Benilton Carvalho <bcarvalh@jhsph.edu> 2015-01-15 18:49:22 +0000;
  • 4b542f0 Commit made by the Bioconductor Git-SVN bridge. Consists of 1 commit. by Benilton Carvalho <bcarvalh@jhsph.edu> 2015-01-15 18:14:37 +0000;
  • 1739667 Commit made by the Bioconductor Git-SVN bridge. Consists of 2 commits. by Benilton Carvalho <bcarvalh@jhsph.edu> 2015-01-15 17:17:15 +0000;
  • fe76a9a Commit made by the Bioconductor Git-SVN bridge. Consists of 1 commit. by Benilton Carvalho <bcarvalh@jhsph.edu> 2015-01-14 17:36:59 +0000;
  • 23d7a57 Commit made by the Bioconductor Git-SVN bridge. Consists of 1 commit. by Benilton Carvalho <bcarvalh@jhsph.edu> 2014-12-17 17:19:41 +0000;
  • 1d2267a Commit made by the Bioconductor Git-SVN bridge. Consists of 2 commits. by Benilton Carvalho <bcarvalh@jhsph.edu> 2014-12-15 17:51:32 +0000;