Name Mode Size
R 040000
data 040000
inst 040000
man 040000
tests 040000
vignettes 040000
.gitignore 100644 0 kb
.travis.yml 100644 0 kb
BinaryFiles 100644 0 kb
DESCRIPTION 100644 3 kb
NAMESPACE 100644 10 kb
README 100644 1 kb
RnBeads is an R package for comprehensive analysis of DNA methylation data obtained with any experimental protocol that provides single-CpG resolution, including Infinium 450K microarray and bisulfite sequencing protocols, but also MeDIP-seq and MBD-seq once the data have been preprocessed with DNA methylation inference software. RnBeads implements an analysis workflow that is significantly more comprehensive than those of existing tools. It documents its results in a highly annotated and readable hypertext report, and it scales to the large sample sizes that are becoming the norm for DNA methylation analysis in human cohorts.