1. Rhtslib
  2. Graph
Graph of Rhtslib
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  • d0cd62a (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:37:54 -0400;
  • ac2e2a6 (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:37:54 -0400;
  • c9b54e2 update NEWS by Hervé Pagès <hpages.on.github@gmail.com> 2023-04-23 21:38:04 -0700;
  • 6d2b979 Apply Tomas Kalibera's patch for Rtools 4.3 by Hervé Pagès <hpages.on.github@gmail.com> 2023-03-23 13:28:35 -0700;
  • a2cbc88 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:11:11 -0400;
  • 1757333 (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:11:11 -0400;
  • 557aadb Set myself as maintainer, update NEWS by Hervé Pagès <hpages.on.github@gmail.com> 2022-10-31 19:41:24 -0700;
  • 82b9086 Get rid of troublemaker file .gitattributes by Hervé Pagès <hpages.on.github@gmail.com> 2022-09-15 18:55:12 -0700;
  • a5335e1 No need to install textutils_internal.h and hts_internal.h anymore by Hervé Pagès <hpages.on.github@gmail.com> 2022-05-24 11:52:21 -0700;
  • 1464530 Revert "Expose CRAM interface" by Hervé Pagès <hpages.on.github@gmail.com> 2022-05-24 09:01:38 -0700;
  • ac2d730 C:/extsoft is gone on Windows, no need to link to stuff in it anymore by Hervé Pagès <hpages.on.github@gmail.com> 2022-05-10 10:45:43 -0700;
  • 6c56266 Get Rhtslib to compile again on Windows+Rtools42 by Hervé Pagès <hpages.on.github@gmail.com> 2022-05-10 10:26:56 -0700;
  • 76c5c23 Expose CRAM interface by Hervé Pagès <hpages.on.github@gmail.com> 2022-05-04 11:04:07 -0700;
  • 4492b67 Update htslib to 1.15.1 (was 1.7) (#29) by Hervé Pagès <hpages@users.noreply.github.com> 2022-05-03 11:57:07 -0700;
  • 8627db4 bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:23:58 +0000;
  • 214fde2 (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:23:58 +0000;
  • 203bab6 update NEWS by Hervé Pagès <hpages.on.github@gmail.com> 2022-04-25 14:33:29 -0700;
  • ee3ca7c Small tweak to Makefile.Rhtslib by Hervé Pagès <hpages.on.github@gmail.com> 2022-04-14 12:39:14 -0700;
  • 945a8a0 Make sure the source tarball generated on Linux compiles on Windows UCRT by Hervé Pagès <hpages.on.github@gmail.com> 2022-03-15 12:10:45 -0700;
  • d6aa336 Apply Tomas Kalibera's patch for Rtools42 compatibility by Hervé Pagès <hpages.on.github@gmail.com> 2022-03-09 00:07:56 -0800;
  • 6063be8 typo by Hervé Pagès <hpages.on.github@gmail.com> 2022-03-04 23:49:14 -0800;
  • 164c4d9 Disable on-the-fly patching at installation time on Windows by Hervé Pagès <hpages.on.github@gmail.com> 2022-02-14 18:37:25 -0800;
  • f72c8cb Acknowledge site-wide or user-specified Makevars file if present by Hervé Pagès <hpages.on.github@gmail.com> 2022-01-03 12:28:12 -0800;
  • f84247d bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:18:59 +0000;
  • f5b20e9 (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:18:59 +0000;
  • da7889b Add rmarkdown to Suggests as commanded by knitr error message by Hervé Pagès <hpages.on.github@gmail.com> 2021-07-01 15:34:28 -0700;
  • 62a879d bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:11:26 +0000;
  • 28051cc (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:11:26 +0000;
  • e5843d4 bold instead of italic by Hervé Pagès <hpages.on.github@gmail.com> 2021-04-22 21:59:13 -0700;
  • 95921f2 bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:02:51 -0400;
  • 899b79f (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:02:51 -0400;
  • 0d9cfd1 Update BugReports info by Hervé Pagès <hpages.on.github@gmail.com> 2020-10-27 04:57:28 -0700;
  • 34d3375 Minor tweaks to DESCRIPTION file by Hervé Pagès <hpages.on.github@gmail.com> 2020-10-27 03:50:21 -0700;
  • b9de22d Update instructions in vignette for how to create Makevars file by Hervé Pagès <hpages@fredhutch.org> 2020-06-25 15:51:46 -0700;
  • 4196fde bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:47:00 +0000;
  • be2166d (origin/RELEASE_3_11, RELEASE_3_11) bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:47:00 +0000;
  • 751a2eb (origin/RELEASE_3_10, RELEASE_3_10) Use R config variable LOCAL_SOFT instead of hard-coded C:/extsoft on Windows by Hervé Pagès <hpages@fredhutch.org> 2020-01-27 15:38:02 -0800;
  • 1052c4c Use R config variable LOCAL_SOFT instead of hard-coded C:/extsoft on Windows by Hervé Pagès <hpages@fredhutch.org> 2020-01-27 15:38:02 -0800;
  • b1777ef bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:39:03 -0400;
  • 29a2ed6 bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:09:10 -0400;
  • 17a4eac update NEWS by Hervé Pagès <hpages@fredhutch.org> 2019-10-28 23:19:10 -0700;
  • 3ed0b5d (origin/RELEASE_3_9, RELEASE_3_9) Everybody should use -D_FILE_OFFSET_BITS=64. Always. by Hervé Pagès <hpages@fredhutch.org> 2019-09-26 21:55:03 -0700;
  • f1c2d57 Make sure pkgconfig() returns quoted paths (so they can contain whitespaces) by Hervé Pagès <hpages@fredhutch.org> 2019-10-09 14:54:27 -0700;
  • 848d23b small clarification by Hervé Pagès <hpages@fredhutch.org> 2019-10-09 13:05:01 -0700;
  • 042e7e0 Add GNU make to SystemRequirements by Hervé Pagès <hpages@fredhutch.org> 2019-10-09 12:44:38 -0700;
  • f412056 Update the doc to reflect some of the recent changes by Hervé Pagès <hpages@fredhutch.org> 2019-10-09 11:34:57 -0700;
  • 55b6e67 Everybody should use -D_FILE_OFFSET_BITS=64. Always. by Hervé Pagès <hpages@fredhutch.org> 2019-09-26 21:55:03 -0700;
  • 736fc02 Add preprocessor flag -D_FILE_OFFSET_BITS=64 on Windows by Hervé Pagès <hpages@fredhutch.org> 2019-09-16 16:50:50 -0700;
  • 0ea8bac Don't overwrite CPPFLAGS, CFLAGS, or LDFLAGS values set in ${R_HOME}/etc/Makeconf on Linux or Mac by Hervé Pagès <hpages@fredhutch.org> 2019-09-16 11:41:53 -0700;
  • b52da35 Add liblzma & libcurl to SystemRequirements by Hervé Pagès <hpages@fredhutch.org> 2019-09-17 00:11:54 -0700;
  • f04bec7 Add bzip2 in SystemRequirements by Hervé Pagès <hpages@fredhutch.org> 2019-09-16 22:24:55 -0700;
  • bfc7575 Add preprocessor flag -D_FILE_OFFSET_BITS=64 on Windows by Hervé Pagès <hpages@fredhutch.org> 2019-09-16 16:50:50 -0700;
  • d600692 Don't overwrite CPPFLAGS, CFLAGS, or LDFLAGS values set in ${R_HOME}/etc/Makeconf on Linux or Mac by Hervé Pagès <hpages@fredhutch.org> 2019-09-16 11:41:53 -0700;
  • 1f907b9 oops, typo by Hervé Pagès <hpages@fredhutch.org> 2019-08-12 08:05:25 -0700;
  • a46d6a3 Various tweaks to enable libcurl on Windows by Hervé Pagès <hpages@fredhutch.org> 2019-08-08 18:38:11 -0700;
  • 61fd176 minor edit by Hervé Pagès <hpages@fredhutch.org> 2019-08-08 10:17:41 -0700;
  • f8db349 Fix PKG_LIBS on Mac by Hervé Pagès <hpages@fredhutch.org> 2019-08-08 10:10:44 -0700;
  • 1f9cf0c Compile HTSlib with libcurl enabled by Hervé Pagès <hpages@fredhutch.org> 2019-08-08 08:53:47 -0700;
  • ec6cde4 Switch from dynamic to static linking on all Unix-like systems by Hervé Pagès <hpages@fredhutch.org> 2019-05-03 09:53:30 -0700;
  • db1d8e1 Switch from dynamic to static linking on all Unix-like systems by Hervé Pagès <hpages@fredhutch.org> 2019-05-03 09:53:30 -0700;
  • 68b159b bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 12:12:23 -0400;
  • fd10095 bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 11:53:53 -0400;
  • 820bab4 update NEWS by Hervé Pagès <hpages@fredhutch.org> 2019-05-02 00:33:38 -0700;
  • f127970 Small update to README.md by Hervé Pagès <hpages@fredhutch.org> 2019-04-16 02:02:30 -0700;
  • eef1e31 version bump by Hervé Pagès <hpages@fredhutch.org> 2019-04-12 01:24:46 -0700;
  • cac20b3 more work on kvsprintf() by Hervé Pagès <hpages@fredhutch.org> 2019-04-11 18:25:12 -0700;
  • 65c0eaa more work on kvsprintf() by Hervé Pagès <hpages@fredhutch.org> 2019-04-11 17:25:58 -0700;
  • 9da1d31 Try to fix kvsprintf() on Windows again by Hervé Pagès <hpages@fredhutch.org> 2019-04-11 15:12:02 -0700;
  • 9b55d87 Fix kvsprintf() on Windows by Hervé Pagès <hpages@fredhutch.org> 2019-04-11 14:48:55 -0700;
  • af25bc0 add StagedInstall: no as stopgap by Martin Morgan <martin.morgan@roswellpark.org> 2019-02-19 16:21:52 -0500;
  • 4be2607 (origin/RELEASE_3_8, RELEASE_3_8) Fix for Solaris by Hervé Pagès <hpages@fredhutch.org> 2019-02-12 06:15:40 -0800;
  • 1b1510c Fix for Solaris by Hervé Pagès <hpages@fredhutch.org> 2019-02-12 06:15:40 -0800;
  • 6120bd4 Include bam_endian.h and bam_cat.c from Samtools by Hervé Pagès <hpages@fredhutch.org> 2019-02-06 02:28:08 -0800;
  • d98ec1b Add C function faidx_fetch_seq_forced_lower() to HTSlib code by Hervé Pagès <hpages@fredhutch.org> 2019-02-06 00:51:05 -0800;
  • ca328c1 Revert previous commit (b23bf3a) by Hervé Pagès <hpages@fredhutch.org> 2019-02-05 23:58:25 -0800;
  • b23bf3a Include razf.c and razf.h from Samtools 0.1.19 by Hervé Pagès <hpages@fredhutch.org> 2019-02-05 13:08:24 -0800;
  • 52de2ee Include bam_aux.c file from Samtools by Hervé Pagès <hpages@fredhutch.org> 2019-02-05 12:12:19 -0800;
  • 43db581 Merge remote-tracking branch 'origin/master' by Hervé Pagès <hpages@fredhutch.org> 2019-01-09 08:56:23 -0800;
  • c02d76d Merge remote-tracking branch 'upstream/master' by Hervé Pagès <hpages@fredhutch.org> 2019-01-09 08:54:58 -0800;
  • 3a559a4 Merge remote-tracking branch 'upstream/master' by Nitesh Turaga <nitesh.turaga@gmail.com> 2018-10-30 14:24:59 -0400;
  • 807311d bump x.y.z versions to odd y after creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:54:34 -0400;
  • 5f5f8f1 bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:41:57 -0400;
  • c6d658f Include textutils_internal.h and hts_internal.h from htslib-1.7 by Hervé Pagès <hpages@fredhutch.org> 2018-10-05 04:10:11 -0700;
  • e3487b1 (origin/RELEASE_3_7, RELEASE_3_7) Simplify PKG_LIBS on Mac by Hervé Pagès <hpages@fredhutch.org> 2018-05-30 04:42:18 -0700;
  • f177ed4 Simplify PKG_LIBS on Mac by Hervé Pagès <hpages@fredhutch.org> 2018-05-30 04:42:18 -0700;
  • 1c43fec oops, misplaced parenthesis by Hervé Pagès <hpages@fredhutch.org> 2018-05-29 12:55:30 -0700;
  • 5059c6a Include the test data files from htslib-1.7/test by Hervé Pagès <hpages@fredhutch.org> 2018-05-29 12:44:09 -0700;
  • 41c350e Add C function hts_idx_get_n() to the HTSlib code by Hervé Pagès <hpages@fredhutch.org> 2018-05-24 01:40:15 -0700;
  • 13ee985 Add C function faidx_fetch_seq2() to the HTSlib code by Hervé Pagès <hpages@fredhutch.org> 2018-05-23 21:58:02 -0700;
  • 5d01134 Include more .h and .c files from Samtools by Hervé Pagès <hpages@fredhutch.org> 2018-05-23 11:59:56 -0700;
  • f45dadb Improve inst/include/README by Hervé Pagès <hpages@fredhutch.org> 2018-05-23 08:45:56 -0700;
  • 79af9f7 Include some .h and .c files from Samtools by Hervé Pagès <hpages@fredhutch.org> 2018-05-23 08:29:35 -0700;
  • 5c2a337 Update vignette to reflect new path to header files by Hervé Pagès <hpages@fredhutch.org> 2018-05-22 18:42:12 -0700;
  • 9224082 Change installation folder of htslib header files by Hervé Pagès <hpages@fredhutch.org> 2018-05-22 18:23:34 -0700;
  • cb2e6d4 bump x.y.z versions to odd y after creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:41:40 -0400;
  • 609de05 bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:35:36 -0400;
  • 197c7c6 Add NEWS file by Hervé Pagès <hpages@fredhutch.org> 2018-04-30 00:56:16 -0700;
  • fc1ac7c Make sure 'make' recipes are executed in the right order by Hervé Pagès <hpages@fredhutch.org> 2018-03-16 09:31:41 -0700;
  • d838e66 Use better target names in src/Makevars* files by Hervé Pagès <hpages@fredhutch.org> 2018-03-14 16:52:05 -0700;
  • e7ee3d2 small tweaks by Hervé Pagès <hpages@fredhutch.org> 2018-03-14 14:05:45 -0700;