1. Rgraphviz
  2. DESCRIPTION
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resoolved merge conflicts

Kasper Daniel Hansen authored on 12/05/2022 23:06:06
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Quick fix for compilation error on lconway (macOS Monterey, R 4.2.0)

Hervé Pagès authored on 10/05/2022 04:36:22
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DESCRIPTION
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@@ -2,7 +2,7 @@ Package: Rgraphviz
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 Title: Provides plotting capabilities for R graph objects
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 Description: Interfaces R with the AT and T graphviz library for
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         plotting R graph objects from the graph package.
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-Version: 2.39.1
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+Version: 2.39.2
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 Authors@R: c(person(c("Kasper", "Daniel"), "Hansen", role = c("cre", "aut"),
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                     email = "kasperdanielhansen@gmail.com"),
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              person("Jeff", "Gentry", role = "aut"),
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bump x.y.z version to odd y following creation of RELEASE_3_15 branch

Nitesh Turaga authored on 26/04/2022 14:54:52
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@@ -2,7 +2,7 @@ Package: Rgraphviz
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 Title: Provides plotting capabilities for R graph objects
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 Description: Interfaces R with the AT and T graphviz library for
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         plotting R graph objects from the graph package.
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-Version: 2.40.0
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+Version: 2.41.0
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 Authors@R: c(person(c("Kasper", "Daniel"), "Hansen", role = c("cre", "aut"),
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                     email = "kasperdanielhansen@gmail.com"),
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              person("Jeff", "Gentry", role = "aut"),
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bump x.y.z version to even y prior to creation of RELEASE_3_15 branch

Nitesh Turaga authored on 26/04/2022 14:54:52
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DESCRIPTION
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@@ -2,7 +2,7 @@ Package: Rgraphviz
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 Title: Provides plotting capabilities for R graph objects
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 Description: Interfaces R with the AT and T graphviz library for
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         plotting R graph objects from the graph package.
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-Version: 2.39.1
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+Version: 2.40.0
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 Authors@R: c(person(c("Kasper", "Daniel"), "Hansen", role = c("cre", "aut"),
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                     email = "kasperdanielhansen@gmail.com"),
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              person("Jeff", "Gentry", role = "aut"),
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UCRT patches from Tomas Kalibra has been applied

Kasper Daniel Hansen authored on 16/03/2022 02:17:11
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@@ -2,7 +2,7 @@ Package: Rgraphviz
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 Title: Provides plotting capabilities for R graph objects
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 Description: Interfaces R with the AT and T graphviz library for
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         plotting R graph objects from the graph package.
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-Version: 2.39.0
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+Version: 2.39.1
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 Authors@R: c(person(c("Kasper", "Daniel"), "Hansen", role = c("cre", "aut"),
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                     email = "kasperdanielhansen@gmail.com"),
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              person("Jeff", "Gentry", role = "aut"),
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bump x.y.z version to odd y following creation of RELEASE_3_14 branch

Nitesh Turaga authored on 26/10/2021 15:45:58
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@@ -2,7 +2,7 @@ Package: Rgraphviz
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 Title: Provides plotting capabilities for R graph objects
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 Description: Interfaces R with the AT and T graphviz library for
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         plotting R graph objects from the graph package.
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-Version: 2.38.0
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 Authors@R: c(person(c("Kasper", "Daniel"), "Hansen", role = c("cre", "aut"),
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                     email = "kasperdanielhansen@gmail.com"),
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              person("Jeff", "Gentry", role = "aut"),
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bump x.y.z version to even y prior to creation of RELEASE_3_14 branch

Nitesh Turaga authored on 26/10/2021 15:45:58
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DESCRIPTION
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@@ -2,7 +2,7 @@ Package: Rgraphviz
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 Title: Provides plotting capabilities for R graph objects
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 Description: Interfaces R with the AT and T graphviz library for
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         plotting R graph objects from the graph package.
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-Version: 2.37.2
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+Version: 2.38.0
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 Authors@R: c(person(c("Kasper", "Daniel"), "Hansen", role = c("cre", "aut"),
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                     email = "kasperdanielhansen@gmail.com"),
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              person("Jeff", "Gentry", role = "aut"),
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fixing seg fault

kasperdanielhansen authored on 13/08/2021 01:19:44
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@@ -2,7 +2,7 @@ Package: Rgraphviz
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 Title: Provides plotting capabilities for R graph objects
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 Description: Interfaces R with the AT and T graphviz library for
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         plotting R graph objects from the graph package.
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-Version: 2.37.1
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+Version: 2.37.2
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 Authors@R: c(person(c("Kasper", "Daniel"), "Hansen", role = c("cre", "aut"),
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                     email = "kasperdanielhansen@gmail.com"),
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              person("Jeff", "Gentry", role = "aut"),
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Fixing length condition error

Kasper Daniel Hansen authored on 11/08/2021 12:52:11
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DESCRIPTION
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@@ -2,7 +2,7 @@ Package: Rgraphviz
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 Title: Provides plotting capabilities for R graph objects
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 Description: Interfaces R with the AT and T graphviz library for
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         plotting R graph objects from the graph package.
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-Version: 2.37.0
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+Version: 2.37.1
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 Authors@R: c(person(c("Kasper", "Daniel"), "Hansen", role = c("cre", "aut"),
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                     email = "kasperdanielhansen@gmail.com"),
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              person("Jeff", "Gentry", role = "aut"),
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bump x.y.z version to odd y following creation of RELEASE_3_13 branch

Nitesh Turaga authored on 19/05/2021 15:33:11
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@@ -2,7 +2,7 @@ Package: Rgraphviz
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 Title: Provides plotting capabilities for R graph objects
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 Description: Interfaces R with the AT and T graphviz library for
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         plotting R graph objects from the graph package.
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-Version: 2.36.0
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+Version: 2.37.0
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 Authors@R: c(person(c("Kasper", "Daniel"), "Hansen", role = c("cre", "aut"),
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                     email = "kasperdanielhansen@gmail.com"),
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              person("Jeff", "Gentry", role = "aut"),
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bump x.y.z version to even y prior to creation of RELEASE_3_13 branch

Nitesh Turaga authored on 19/05/2021 15:33:11
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 Title: Provides plotting capabilities for R graph objects
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 Description: Interfaces R with the AT and T graphviz library for
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         plotting R graph objects from the graph package.
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-Version: 2.35.0
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+Version: 2.36.0
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 Authors@R: c(person(c("Kasper", "Daniel"), "Hansen", role = c("cre", "aut"),
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                     email = "kasperdanielhansen@gmail.com"),
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              person("Jeff", "Gentry", role = "aut"),
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bump x.y.z version to odd y following creation of RELEASE_3_12 branch

Nitesh Turaga authored on 27/10/2020 14:22:26
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@@ -2,7 +2,7 @@ Package: Rgraphviz
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 Title: Provides plotting capabilities for R graph objects
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 Description: Interfaces R with the AT and T graphviz library for
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         plotting R graph objects from the graph package.
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-Version: 2.34.0
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+Version: 2.35.0
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 Authors@R: c(person(c("Kasper", "Daniel"), "Hansen", role = c("cre", "aut"),
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                     email = "kasperdanielhansen@gmail.com"),
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              person("Jeff", "Gentry", role = "aut"),
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bump x.y.z version to even y prior to creation of RELEASE_3_12 branch

Nitesh Turaga authored on 27/10/2020 14:22:26
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DESCRIPTION
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@@ -2,7 +2,7 @@ Package: Rgraphviz
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 Title: Provides plotting capabilities for R graph objects
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 Description: Interfaces R with the AT and T graphviz library for
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         plotting R graph objects from the graph package.
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-Version: 2.33.0
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+Version: 2.34.0
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 Authors@R: c(person(c("Kasper", "Daniel"), "Hansen", role = c("cre", "aut"),
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                     email = "kasperdanielhansen@gmail.com"),
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              person("Jeff", "Gentry", role = "aut"),
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bump x.y.z version to odd y following creation of RELEASE_3_11 branch

Nitesh Turaga authored on 27/04/2020 18:08:22
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DESCRIPTION
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@@ -2,7 +2,7 @@ Package: Rgraphviz
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 Title: Provides plotting capabilities for R graph objects
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 Description: Interfaces R with the AT and T graphviz library for
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         plotting R graph objects from the graph package.
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-Version: 2.32.0
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+Version: 2.33.0
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 Authors@R: c(person(c("Kasper", "Daniel"), "Hansen", role = c("cre", "aut"),
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                     email = "kasperdanielhansen@gmail.com"),
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              person("Jeff", "Gentry", role = "aut"),
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bump x.y.z version to even y prior to creation of RELEASE_3_11 branch

Nitesh Turaga authored on 27/04/2020 18:08:22
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@@ -2,7 +2,7 @@ Package: Rgraphviz
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 Title: Provides plotting capabilities for R graph objects
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 Description: Interfaces R with the AT and T graphviz library for
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         plotting R graph objects from the graph package.
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-Version: 2.31.0
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+Version: 2.32.0
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 Authors@R: c(person(c("Kasper", "Daniel"), "Hansen", role = c("cre", "aut"),
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                     email = "kasperdanielhansen@gmail.com"),
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              person("Jeff", "Gentry", role = "aut"),
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bump x.y.z version to odd y after creation of RELEASE_3_10 branch

Nitesh Turaga authored on 29/10/2019 17:34:31
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 Title: Provides plotting capabilities for R graph objects
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 Description: Interfaces R with the AT and T graphviz library for
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         plotting R graph objects from the graph package.
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 Authors@R: c(person(c("Kasper", "Daniel"), "Hansen", role = c("cre", "aut"),
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                     email = "kasperdanielhansen@gmail.com"),
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              person("Jeff", "Gentry", role = "aut"),
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bump x.y.z version to even y prior to creation of RELEASE_3_10 branch

Nitesh Turaga authored on 29/10/2019 17:07:24
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 Title: Provides plotting capabilities for R graph objects
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 Description: Interfaces R with the AT and T graphviz library for
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         plotting R graph objects from the graph package.
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-Version: 2.29.0
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 Authors@R: c(person(c("Kasper", "Daniel"), "Hansen", role = c("cre", "aut"),
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                     email = "kasperdanielhansen@gmail.com"),
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              person("Jeff", "Gentry", role = "aut"),
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bump x.y.z versions to odd y after creation of RELEASE_3_9 branch

Nitesh Turaga authored on 02/05/2019 16:10:30
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@@ -2,7 +2,7 @@ Package: Rgraphviz
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 Title: Provides plotting capabilities for R graph objects
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 Description: Interfaces R with the AT and T graphviz library for
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         plotting R graph objects from the graph package.
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-Version: 2.28.0
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 Authors@R: c(person(c("Kasper", "Daniel"), "Hansen", role = c("cre", "aut"),
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                     email = "kasperdanielhansen@gmail.com"),
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              person("Jeff", "Gentry", role = "aut"),
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bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch

Nitesh Turaga authored on 02/05/2019 15:53:01
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@@ -2,7 +2,7 @@ Package: Rgraphviz
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 Title: Provides plotting capabilities for R graph objects
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 Description: Interfaces R with the AT and T graphviz library for
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         plotting R graph objects from the graph package.
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-Version: 2.27.0
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 Authors@R: c(person(c("Kasper", "Daniel"), "Hansen", role = c("cre", "aut"),
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                     email = "kasperdanielhansen@gmail.com"),
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              person("Jeff", "Gentry", role = "aut"),
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bump x.y.z versions to odd y after creation of RELEASE_3_8 branch

vobencha authored on 30/10/2018 15:54:26
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 Title: Provides plotting capabilities for R graph objects
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 Description: Interfaces R with the AT and T graphviz library for
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         plotting R graph objects from the graph package.
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 Authors@R: c(person(c("Kasper", "Daniel"), "Hansen", role = c("cre", "aut"),
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                     email = "kasperdanielhansen@gmail.com"),
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bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch

vobencha authored on 30/10/2018 15:41:41
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 Title: Provides plotting capabilities for R graph objects
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 Description: Interfaces R with the AT and T graphviz library for
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         plotting R graph objects from the graph package.
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-Version: 2.25.1
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 Authors@R: c(person(c("Kasper", "Daniel"), "Hansen", role = c("cre", "aut"),
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                     email = "kasperdanielhansen@gmail.com"),
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replace BiocInstaller biocLite mentions with BiocManager

LiNk-NY authored on 30/08/2018 17:55:19
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 Title: Provides plotting capabilities for R graph objects
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 Authors@R: c(person(c("Kasper", "Daniel"), "Hansen", role = c("cre", "aut"),
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              person("Jeff", "Gentry", role = "aut"),
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bump x.y.z versions to odd y after creation of RELEASE_3_7 branch

vobencha authored on 30/04/2018 14:41:36
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 Title: Provides plotting capabilities for R graph objects
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 Authors@R: c(person(c("Kasper", "Daniel"), "Hansen", role = c("cre", "aut"),
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                     email = "kasperdanielhansen@gmail.com"),
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bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch

vobencha authored on 30/04/2018 14:34:57
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 Title: Provides plotting capabilities for R graph objects
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 Description: Interfaces R with the AT and T graphviz library for
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         plotting R graph objects from the graph package.
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 Authors@R: c(person(c("Kasper", "Daniel"), "Hansen", role = c("cre", "aut"),
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                     email = "kasperdanielhansen@gmail.com"),
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              person("Jeff", "Gentry", role = "aut"),
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bump x.y.z versions to odd y after creation of RELEASE_3_6 branch

Hervé Pagès authored on 30/10/2017 16:52:04
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@@ -2,7 +2,7 @@ Package: Rgraphviz
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 Title: Provides plotting capabilities for R graph objects
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 Description: Interfaces R with the AT and T graphviz library for
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         plotting R graph objects from the graph package.
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 Authors@R: c(person(c("Kasper", "Daniel"), "Hansen", role = c("cre", "aut"),
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                     email = "kasperdanielhansen@gmail.com"),
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              person("Jeff", "Gentry", role = "aut"),
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bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch

Hervé Pagès authored on 30/10/2017 16:38:29
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 Title: Provides plotting capabilities for R graph objects
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 Description: Interfaces R with the AT and T graphviz library for
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         plotting R graph objects from the graph package.
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 Authors@R: c(person(c("Kasper", "Daniel"), "Hansen", role = c("cre", "aut"),
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                     email = "kasperdanielhansen@gmail.com"),
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              person("Jeff", "Gentry", role = "aut"),
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bump x.y.z versions to odd y after creation of 3_5 branch

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@129129 bc3139a8-67e5-0310-9ffc-ced21a209358

Herve Pages authored on 24/04/2017 19:50:57
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 Title: Provides plotting capabilities for R graph objects
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 Description: Interfaces R with the AT and T graphviz library for
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         plotting R graph objects from the graph package.
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-Version: 2.20.0
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 Authors@R: c(person(c("Kasper", "Daniel"), "Hansen", role = c("cre", "aut"),
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                     email = "kasperdanielhansen@gmail.com"),
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              person("Jeff", "Gentry", role = "aut"),
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bump x.y.z versions to even y prior to creation of 3_5 branch

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@129126 bc3139a8-67e5-0310-9ffc-ced21a209358

Herve Pages authored on 24/04/2017 19:25:24
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 Title: Provides plotting capabilities for R graph objects
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 Description: Interfaces R with the AT and T graphviz library for
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         plotting R graph objects from the graph package.
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 Authors@R: c(person(c("Kasper", "Daniel"), "Hansen", role = c("cre", "aut"),
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                     email = "kasperdanielhansen@gmail.com"),
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bump x.y.z versions to odd 'y' after creation of 3_4 branch

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@122712 bc3139a8-67e5-0310-9ffc-ced21a209358

Herve Pages authored on 17/10/2016 19:10:43
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         plotting R graph objects from the graph package.
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 Authors@R: c(person(c("Kasper", "Daniel"), "Hansen", role = c("cre", "aut"),
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bump x.y.z versions to even 'y' prior to creation of 3_4 branch

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@122710 bc3139a8-67e5-0310-9ffc-ced21a209358

Herve Pages authored on 17/10/2016 18:45:06
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         plotting R graph objects from the graph package.
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 Authors@R: c(person(c("Kasper", "Daniel"), "Hansen", role = c("cre", "aut"),
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              person("Jeff", "Gentry", role = "aut"),
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bump version after creating 3.3 branch

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@117081 bc3139a8-67e5-0310-9ffc-ced21a209358

Dan Tenenbaum authored on 03/05/2016 21:30:44
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 Title: Provides plotting capabilities for R graph objects
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 Description: Interfaces R with the AT and T graphviz library for
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         plotting R graph objects from the graph package.
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 Authors@R: c(person(c("Kasper", "Daniel"), "Hansen", role = c("cre", "aut"),
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                     email = "kasperdanielhansen@gmail.com"),
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              person("Jeff", "Gentry", role = "aut"),
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Bump versions prior to creation of 3.3 branch

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@117079 bc3139a8-67e5-0310-9ffc-ced21a209358

Dan Tenenbaum authored on 03/05/2016 21:20:18
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 Title: Provides plotting capabilities for R graph objects
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 Description: Interfaces R with the AT and T graphviz library for
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         plotting R graph objects from the graph package.
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 Authors@R: c(person(c("Kasper", "Daniel"), "Hansen", role = c("cre", "aut"),
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              person("Jeff", "Gentry", role = "aut"),
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Bumped version number of all packages after creation of 3.2 branch.

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@109592 bc3139a8-67e5-0310-9ffc-ced21a209358

Dan Tenenbaum authored on 13/10/2015 19:59:53
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@@ -2,7 +2,7 @@ Package: Rgraphviz
2 2 
 Title: Provides plotting capabilities for R graph objects
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 Description: Interfaces R with the AT and T graphviz library for
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         plotting R graph objects from the graph package.
5 
-Version: 2.14.0
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+Version: 2.15.0
6 6 
 Authors@R: c(person(c("Kasper", "Daniel"), "Hansen", role = c("cre", "aut"),
7 7 
                     email = "kasperdanielhansen@gmail.com"),
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              person("Jeff", "Gentry", role = "aut"),
Browse code

Bumped versions of all packages prior to creating 3.2 branch.

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@109589 bc3139a8-67e5-0310-9ffc-ced21a209358

Dan Tenenbaum authored on 13/10/2015 19:36:05
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@@ -2,7 +2,7 @@ Package: Rgraphviz
2 2 
 Title: Provides plotting capabilities for R graph objects
3 3 
 Description: Interfaces R with the AT and T graphviz library for
4 4 
         plotting R graph objects from the graph package.
5 
-Version: 2.13.0
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+Version: 2.14.0
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 Authors@R: c(person(c("Kasper", "Daniel"), "Hansen", role = c("cre", "aut"),
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                     email = "kasperdanielhansen@gmail.com"),
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              person("Jeff", "Gentry", role = "aut"),
Browse code

Bump versions in trunk after creation of 3.1 branch.

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@102594 bc3139a8-67e5-0310-9ffc-ced21a209358

Dan Tenenbaum authored on 16/04/2015 20:02:44
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@@ -2,7 +2,7 @@ Package: Rgraphviz
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 Title: Provides plotting capabilities for R graph objects
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 Description: Interfaces R with the AT and T graphviz library for
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         plotting R graph objects from the graph package.
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-Version: 2.12.0
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+Version: 2.13.0
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 Authors@R: c(person(c("Kasper", "Daniel"), "Hansen", role = c("cre", "aut"),
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                     email = "kasperdanielhansen@gmail.com"),
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              person("Jeff", "Gentry", role = "aut"),
Browse code

Bump versions prior to creating 3.1 branch.

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@102591 bc3139a8-67e5-0310-9ffc-ced21a209358

Dan Tenenbaum authored on 16/04/2015 19:42:01
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@@ -2,7 +2,7 @@ Package: Rgraphviz
2 2 
 Title: Provides plotting capabilities for R graph objects
3 3 
 Description: Interfaces R with the AT and T graphviz library for
4 4 
         plotting R graph objects from the graph package.
5 
-Version: 2.11.2
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+Version: 2.12.0
6 6 
 Authors@R: c(person(c("Kasper", "Daniel"), "Hansen", role = c("cre", "aut"),
7 7 
                     email = "kasperdanielhansen@gmail.com"),
8 8 
              person("Jeff", "Gentry", role = "aut"),
Browse code

working around an issue noticed with mvGST. More info will be provided.

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@101619 bc3139a8-67e5-0310-9ffc-ced21a209358

Dan Tenenbaum authored on 30/03/2015 20:36:14
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@@ -2,7 +2,7 @@ Package: Rgraphviz
2 2 
 Title: Provides plotting capabilities for R graph objects
3 3 
 Description: Interfaces R with the AT and T graphviz library for
4 4 
         plotting R graph objects from the graph package.
5 
-Version: 2.11.1
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+Version: 2.11.2
6 6 
 Authors@R: c(person(c("Kasper", "Daniel"), "Hansen", role = c("cre", "aut"),
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                     email = "kasperdanielhansen@gmail.com"),
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              person("Jeff", "Gentry", role = "aut"),
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changes for compatibility with new toolchain

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@100726 bc3139a8-67e5-0310-9ffc-ced21a209358

Dan Tenenbaum authored on 16/03/2015 18:56:33
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@@ -2,7 +2,7 @@ Package: Rgraphviz
2 2 
 Title: Provides plotting capabilities for R graph objects
3 3 
 Description: Interfaces R with the AT and T graphviz library for
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         plotting R graph objects from the graph package.
5 
-Version: 2.11.0
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+Version: 2.11.1
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 Authors@R: c(person(c("Kasper", "Daniel"), "Hansen", role = c("cre", "aut"),
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                     email = "kasperdanielhansen@gmail.com"),
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              person("Jeff", "Gentry", role = "aut"),
Browse code

Bumping versions after creating 3.0 release branch.

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@95443 bc3139a8-67e5-0310-9ffc-ced21a209358

Dan Tenenbaum authored on 13/10/2014 21:47:41
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@@ -2,7 +2,7 @@ Package: Rgraphviz
2 2 
 Title: Provides plotting capabilities for R graph objects
3 3 
 Description: Interfaces R with the AT and T graphviz library for
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         plotting R graph objects from the graph package.
5 
-Version: 2.10.0
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+Version: 2.11.0
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 Authors@R: c(person(c("Kasper", "Daniel"), "Hansen", role = c("cre", "aut"),
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                     email = "kasperdanielhansen@gmail.com"),
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              person("Jeff", "Gentry", role = "aut"),
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Bump package versions prior to creating the 3.0 branch.

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@95439 bc3139a8-67e5-0310-9ffc-ced21a209358

Dan Tenenbaum authored on 13/10/2014 21:38:33
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@@ -2,7 +2,7 @@ Package: Rgraphviz
2 2 
 Title: Provides plotting capabilities for R graph objects
3 3 
 Description: Interfaces R with the AT and T graphviz library for
4 4 
         plotting R graph objects from the graph package.
5 
-Version: 2.9.1
5 
+Version: 2.10.0
6 6 
 Authors@R: c(person(c("Kasper", "Daniel"), "Hansen", role = c("cre", "aut"),
7 7 
                     email = "kasperdanielhansen@gmail.com"),
8 8 
              person("Jeff", "Gentry", role = "aut"),
Browse code

Commit made by the Bioconductor Git-SVN bridge. Consists of 2 commit(s).

Commit information:

Commit id: 40e7aa54c0a3970d7183b38b439456e717691670
Commit message:
Fixed issue with Rgraphviz on Ubuntu 12.04 uncovered by the agressive compiler settings used on this platform
Committed by Kasper Daniel Hansen <kasperdanielhansen at gmail.com>
Commit date: 2014-04-29T11:07:51-04:00

Commit id: 64183ff598f2f9c5c4561892d167007c638fe4ce
Commit message:
Merge branch 'master' of github.com:kasperdanielhansen/Rgraphviz
Committed by Kasper Daniel Hansen <kasperdanielhansen at gmail.com>
Commit date: 2014-04-29T11:07:59-04:00

From: Bioconductor Git-SVN Bridge <bioc-sync@bioconductor.org>

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@89633 bc3139a8-67e5-0310-9ffc-ced21a209358

Kasper D. Hansen authored on 29/04/2014 15:08:12
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@@ -2,7 +2,7 @@ Package: Rgraphviz
2 2 
 Title: Provides plotting capabilities for R graph objects
3 3 
 Description: Interfaces R with the AT and T graphviz library for
4 4 
         plotting R graph objects from the graph package.
5 
-Version: 2.9.0
5 
+Version: 2.9.1
6 6 
 Authors@R: c(person(c("Kasper", "Daniel"), "Hansen", role = c("cre", "aut"),
7 7 
                     email = "kasperdanielhansen@gmail.com"),
8 8 
              person("Jeff", "Gentry", role = "aut"),
Browse code

Commit made by the Bioconductor Git-SVN bridge. Consists of 1 commit(s).

Commit information:

Commit id: c50652604fe24c41b823da02fa3373148a6b399d
Commit message:
updated maintainer email
Committed by Kasper Daniel Hansen <kasperdanielhansen at gmail.com>
Commit date: 2014-04-26T16:42:13-04:00

From: Bioconductor Git-SVN Bridge <bioc-sync@bioconductor.org>

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@89536 bc3139a8-67e5-0310-9ffc-ced21a209358

Kasper D. Hansen authored on 26/04/2014 20:42:28
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@@ -3,18 +3,42 @@ Title: Provides plotting capabilities for R graph objects
3 3 
 Description: Interfaces R with the AT and T graphviz library for
4 4 
         plotting R graph objects from the graph package.
5 5 
 Version: 2.9.0
6 
-Author: Jeff Gentry, Li Long, Robert Gentleman, Seth Falcon, Florian
7 
-        Hahne, Deepayan Sarkar, Kasper Daniel Hansen
8 
-Maintainer: Kasper Daniel Hansen <khansen@jhsph.edu>
9 
-Depends: R (>= 2.6.0), methods, utils, graph, grid
10 
-Imports: stats4, graphics, grDevices
11 
-Suggests: RUnit, BiocGenerics, XML
6 
+Authors@R: c(person(c("Kasper", "Daniel"), "Hansen", role = c("cre", "aut"),
7 
+                    email = "kasperdanielhansen@gmail.com"),
8 
+             person("Jeff", "Gentry", role = "aut"),
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+             person("Li", "Long", role = "aut"),
10 
+             person("Robert", "Gentleman", role = "aut"),
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+             person("Seth", "Falcon", role = "aut"),
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+             person("Florian", "Hahne", role = "aut"),
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+             person("Deepayan", "Sarkar", role = "aut"))
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+Depends: R (>= 2.6.0),
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+	 methods,
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+	 utils,
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+	 graph,
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+	 grid
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+Imports: stats4,
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+	 graphics,
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+	 grDevices
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+Suggests: RUnit,
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+	  BiocGenerics,
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+	  XML
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 SystemRequirements: optionally Graphviz (>= 2.16)
13 26 
 GraphvizDetails: Graphviz 2.28.0
14 27 
 License: EPL
15 28 
 LazyLoad: Yes
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-Collate: AllGenerics.R AllClasses.R SimpleMethods.R graphvizVersion.R
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-        graphviz_build_version.R agfunctions.R attrs.R graphLayout.R
18 
-        plotGraph.R plotUtils.R layoutGraph.R renderGraph.R
19 
-        graph_methods.R writers.R zzz.R
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+Collate: AllGenerics.R
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+	 AllClasses.R
31 
+	 SimpleMethods.R
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+	 graphvizVersion.R
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+	 graphviz_build_version.R
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+	 agfunctions.R
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+	 attrs.R
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+	 graphLayout.R
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+	 plotGraph.R
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+	 plotUtils.R
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+	 layoutGraph.R
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+	 renderGraph.R
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+	 graph_methods.R
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+	 writers.R
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+	 zzz.R
20 44 
 biocViews: GraphAndNetwork, Visualization
Browse code

Second version bump after creating 2.14 release branch.

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@88840 bc3139a8-67e5-0310-9ffc-ced21a209358

Dan Tenenbaum authored on 11/04/2014 21:21:21
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@@ -2,7 +2,7 @@ Package: Rgraphviz
2 2 
 Title: Provides plotting capabilities for R graph objects
3 3 
 Description: Interfaces R with the AT and T graphviz library for
4 4 
         plotting R graph objects from the graph package.
5 
-Version: 2.8.0
5 
+Version: 2.9.0
6 6 
 Author: Jeff Gentry, Li Long, Robert Gentleman, Seth Falcon, Florian
7 7 
         Hahne, Deepayan Sarkar, Kasper Daniel Hansen
8 8 
 Maintainer: Kasper Daniel Hansen <khansen@jhsph.edu>
Browse code

First version bump prior to creating 2.14 branch.

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@88838 bc3139a8-67e5-0310-9ffc-ced21a209358

Dan Tenenbaum authored on 11/04/2014 21:07:21
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@@ -2,7 +2,7 @@ Package: Rgraphviz
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 Title: Provides plotting capabilities for R graph objects
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 Description: Interfaces R with the AT and T graphviz library for
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         plotting R graph objects from the graph package.
5 
-Version: 2.7.2
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+Version: 2.8.0
6 6 
 Author: Jeff Gentry, Li Long, Robert Gentleman, Seth Falcon, Florian
7 7 
         Hahne, Deepayan Sarkar, Kasper Daniel Hansen
8 8 
 Maintainer: Kasper Daniel Hansen <khansen@jhsph.edu>
Browse code

modify to new biocViews to DESCRIPTION file

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@87035 bc3139a8-67e5-0310-9ffc-ced21a209358

Sonali Arora authored on 04/03/2014 22:12:21
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@@ -2,9 +2,9 @@ Package: Rgraphviz
2 2 
 Title: Provides plotting capabilities for R graph objects
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 Description: Interfaces R with the AT and T graphviz library for
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         plotting R graph objects from the graph package.
5 
-Version: 2.7.1
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-Author: Jeff Gentry, Li Long, Robert Gentleman, Seth Falcon,
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-   Florian Hahne, Deepayan Sarkar, Kasper Daniel Hansen
5 
+Version: 2.7.2
6 
+Author: Jeff Gentry, Li Long, Robert Gentleman, Seth Falcon, Florian
7 
+        Hahne, Deepayan Sarkar, Kasper Daniel Hansen
8 8 
 Maintainer: Kasper Daniel Hansen <khansen@jhsph.edu>
9 9 
 Depends: R (>= 2.6.0), methods, utils, graph, grid
10 10 
 Imports: stats4, graphics, grDevices
... ... 
@@ -13,19 +13,8 @@ SystemRequirements: optionally Graphviz (>= 2.16)
13 13 
 GraphvizDetails: Graphviz 2.28.0
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 License: EPL
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 LazyLoad: Yes
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-Collate: AllGenerics.R
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-	 AllClasses.R
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-	 SimpleMethods.R
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-	 graphvizVersion.R
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-	 graphviz_build_version.R
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-	 agfunctions.R
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-         attrs.R
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-	 graphLayout.R
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-	 plotGraph.R
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-	 plotUtils.R
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-	 layoutGraph.R
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-	 renderGraph.R
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-	 graph_methods.R
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-	 writers.R
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- 	 zzz.R
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-biocViews: GraphsAndNetworks, NetworkVisualization
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+Collate: AllGenerics.R AllClasses.R SimpleMethods.R graphvizVersion.R
17 
+        graphviz_build_version.R agfunctions.R attrs.R graphLayout.R
18 
+        plotGraph.R plotUtils.R layoutGraph.R renderGraph.R
19 
+        graph_methods.R writers.R zzz.R
20 
+biocViews: GraphAndNetwork, Visualization
Browse code

Commit made by the Bioconductor Git-SVN bridge. Consists of 3 commit(s).

Commit information:

Commit id: 1bbadd5e8118e5509eef035914aa8adebba604b7
Commit message:
fixed include statements in graohviz
Committed by Kasper Daniel Hansen <kasperdanielhansen at gmail.com>
Commit date: 2014-03-03T15:29:19-08:00

Commit id: 9a4b223568b7ed5c5146ccc21c48b9f1e66c41d3
Commit message:
updated NEWS
Committed by Kasper Daniel Hansen <kasperdanielhansen at gmail.com>
Commit date: 2014-03-03T15:30:41-08:00

Commit id: 3f3e2d33e7d802925296559b9a0d2e37f5a70fe9
Commit message:
Merge branch 'master' of github.com:kasperdanielhansen/Rgraphviz
Committed by Kasper Daniel Hansen <kasperdanielhansen at gmail.com>
Commit date: 2014-03-03T15:30:53-08:00

From: Bioconductor Git-SVN Bridge <bioc-sync@bioconductor.org>

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@86991 bc3139a8-67e5-0310-9ffc-ced21a209358

Kasper D. Hansen authored on 03/03/2014 23:31:39
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@@ -2,7 +2,7 @@ Package: Rgraphviz
2 2 
 Title: Provides plotting capabilities for R graph objects
3 3 
 Description: Interfaces R with the AT and T graphviz library for
4 4 
         plotting R graph objects from the graph package.
5 
-Version: 2.7.0
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+Version: 2.7.1
6 6 
 Author: Jeff Gentry, Li Long, Robert Gentleman, Seth Falcon,
7 7 
    Florian Hahne, Deepayan Sarkar, Kasper Daniel Hansen
8 8 
 Maintainer: Kasper Daniel Hansen <khansen@jhsph.edu>
Browse code

bump version after release branch has been created

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@81644 bc3139a8-67e5-0310-9ffc-ced21a209358

Dan Tenenbaum authored on 14/10/2013 21:47:19
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@@ -2,7 +2,7 @@ Package: Rgraphviz
2 2 
 Title: Provides plotting capabilities for R graph objects
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 Description: Interfaces R with the AT and T graphviz library for
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         plotting R graph objects from the graph package.
5 
-Version: 2.6.0
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+Version: 2.7.0
6 6 
 Author: Jeff Gentry, Li Long, Robert Gentleman, Seth Falcon,
7 7 
    Florian Hahne, Deepayan Sarkar, Kasper Daniel Hansen
8 8 
 Maintainer: Kasper Daniel Hansen <khansen@jhsph.edu>
Browse code

bump versions prior to creating BioC 2.13 branch

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@81642 bc3139a8-67e5-0310-9ffc-ced21a209358

Dan Tenenbaum authored on 14/10/2013 21:29:21
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 Title: Provides plotting capabilities for R graph objects
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 Description: Interfaces R with the AT and T graphviz library for
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         plotting R graph objects from the graph package.
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-Version: 2.5.7
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+Version: 2.6.0
6 6 
 Author: Jeff Gentry, Li Long, Robert Gentleman, Seth Falcon,
7 7 
    Florian Hahne, Deepayan Sarkar, Kasper Daniel Hansen
8 8 
 Maintainer: Kasper Daniel Hansen <khansen@jhsph.edu>
Browse code

moved vignettes to vignettes from inst/doc

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@81151 bc3139a8-67e5-0310-9ffc-ced21a209358

Kasper D. Hansen authored on 04/10/2013 15:25:13
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 Title: Provides plotting capabilities for R graph objects
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 Description: Interfaces R with the AT and T graphviz library for
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         plotting R graph objects from the graph package.
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-Version: 2.5.6
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+Version: 2.5.7
6 6 
 Author: Jeff Gentry, Li Long, Robert Gentleman, Seth Falcon,
7 7 
    Florian Hahne, Deepayan Sarkar, Kasper Daniel Hansen
8 8 
 Maintainer: Kasper Daniel Hansen <khansen@jhsph.edu>
Browse code

trying to add grDevices to Imports/NAMESPACE to fixed weird R CMD build bug/issue

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@81131 bc3139a8-67e5-0310-9ffc-ced21a209358

Kasper D. Hansen authored on 04/10/2013 02:34:50
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@@ -7,7 +7,7 @@ Author: Jeff Gentry, Li Long, Robert Gentleman, Seth Falcon,
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    Florian Hahne, Deepayan Sarkar, Kasper Daniel Hansen
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 Maintainer: Kasper Daniel Hansen <khansen@jhsph.edu>
9 9 
 Depends: R (>= 2.6.0), methods, utils, graph, grid
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-Imports: stats4, graphics
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+Imports: stats4, graphics, grDevices
11 11 
 Suggests: RUnit, BiocGenerics, XML
12 12 
 SystemRequirements: optionally Graphviz (>= 2.16)
13 13 
 GraphvizDetails: Graphviz 2.28.0
Browse code

changed lt~obsolete.m4 to lt-obsolete.m4 and re-ran autoconf. This fixes an warning from R CMD check

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@80896 bc3139a8-67e5-0310-9ffc-ced21a209358

Kasper D. Hansen authored on 28/09/2013 23:16:03
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@@ -2,7 +2,7 @@ Package: Rgraphviz
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 Title: Provides plotting capabilities for R graph objects
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 Description: Interfaces R with the AT and T graphviz library for
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         plotting R graph objects from the graph package.
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-Version: 2.5.5
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+Version: 2.5.6
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 Author: Jeff Gentry, Li Long, Robert Gentleman, Seth Falcon,
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    Florian Hahne, Deepayan Sarkar, Kasper Daniel Hansen
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 Maintainer: Kasper Daniel Hansen <khansen@jhsph.edu>
Browse code

Updated Imports/Depends/NAMESPACE as per R CMD check

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@80895 bc3139a8-67e5-0310-9ffc-ced21a209358

Kasper D. Hansen authored on 28/09/2013 22:39:47
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@@ -2,12 +2,12 @@ Package: Rgraphviz
2 2 
 Title: Provides plotting capabilities for R graph objects
3 3 
 Description: Interfaces R with the AT and T graphviz library for
4 4 
         plotting R graph objects from the graph package.
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-Version: 2.5.4
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+Version: 2.5.5
6 6 
 Author: Jeff Gentry, Li Long, Robert Gentleman, Seth Falcon,
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    Florian Hahne, Deepayan Sarkar, Kasper Daniel Hansen
8 8 
 Maintainer: Kasper Daniel Hansen <khansen@jhsph.edu>
9 9 
 Depends: R (>= 2.6.0), methods, utils, graph, grid
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-Imports: stats4, graph, graphics, grDevices, grid, methods, utils
10 
+Imports: stats4, graphics
11 11 
 Suggests: RUnit, BiocGenerics, XML
12 12 
 SystemRequirements: optionally Graphviz (>= 2.16)
13 13 
 GraphvizDetails: Graphviz 2.28.0
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Fixed an issue resulting in a warning message using pieGylph with default values (reported by Cristobal Fresno Rodríguez <Cristobalfresno@gmail.com>

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@77401 bc3139a8-67e5-0310-9ffc-ced21a209358

Kasper D. Hansen authored on 11/06/2013 18:00:50
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 Title: Provides plotting capabilities for R graph objects
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fixing up DESCRIPTION

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@76925 bc3139a8-67e5-0310-9ffc-ced21a209358

Kasper D. Hansen authored on 28/05/2013 13:52:00
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 Package: Rgraphviz
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 Title: Provides plotting capabilities for R graph objects
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 Description: Interfaces R with the AT and T graphviz library for
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-        plotting R graph objects from the graph package. Users on all
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-        platforms must install graphviz; see the README file,
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-        available in the source distribution of this file, for
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-        details.
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+        plotting R graph objects from the graph package.
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+Version: 2.5.3
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 Author: Jeff Gentry, Li Long, Robert Gentleman, Seth Falcon,
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    Florian Hahne, Deepayan Sarkar, Kasper Daniel Hansen
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 Maintainer: Kasper Daniel Hansen <khansen@jhsph.edu>
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 Depends: R (>= 2.6.0), methods, utils, graph, grid
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 Imports: stats4, graph, graphics, grDevices, grid, methods, utils
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 Suggests: RUnit, BiocGenerics, XML
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-SystemRequirements: Graphviz (>= 2.16)
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 GraphvizDetails: Graphviz 2.28.0
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 License: EPL
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 LazyLoad: Yes
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changed license to EPL, as per discussion amongst authors

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@76868 bc3139a8-67e5-0310-9ffc-ced21a209358

Kasper D. Hansen authored on 24/05/2013 15:00:44
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 LazyLoad: Yes
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 Collate: AllGenerics.R
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 	 AllClasses.R
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expose par(mai) in plot,Ragraph-method

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@76619 bc3139a8-67e5-0310-9ffc-ced21a209358

Martin Morgan authored on 15/05/2013 20:36:16
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Bump y in version x.y.z to odd number in devel

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@75270 bc3139a8-67e5-0310-9ffc-ced21a209358

Dan Tenenbaum authored on 03/04/2013 22:06:11
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bump y of x.y.z version number for BioC 2.12 release

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@75263 bc3139a8-67e5-0310-9ffc-ced21a209358

Dan Tenenbaum authored on 03/04/2013 21:32:27
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    Florian Hahne, Deepayan Sarkar, Kasper Daniel Hansen
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Fixing bug on OpenBSD regarding sincos in Graphviz. Thanks to Rainer Hurling for reporting and testing.

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@74564 bc3139a8-67e5-0310-9ffc-ced21a209358

Kasper D. Hansen authored on 19/03/2013 18:35:37
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Fix handling of fontsize attrib for nodes and edges (seems to have been broken at least since 2006).

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@73445 bc3139a8-67e5-0310-9ffc-ced21a209358

Herve Pages authored on 13/02/2013 05:54:25
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@<- has been moved from methods to base, so it no longer needs to be imported in package NAMESPACEs.

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@72298 bc3139a8-67e5-0310-9ffc-ced21a209358

Dan Tenenbaum authored on 04/01/2013 21:18:09
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removed unneeded header file; thanks to Brian D Ripley

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@72244 bc3139a8-67e5-0310-9ffc-ced21a209358

Kasper D. Hansen authored on 02/01/2013 22:12:43
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added calls to path.expand; include some checking of number of nodes before layout

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@70603 bc3139a8-67e5-0310-9ffc-ced21a209358

Kasper D. Hansen authored on 17/10/2012 14:05:51
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document agread

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@70573 bc3139a8-67e5-0310-9ffc-ced21a209358

Martin Morgan authored on 16/10/2012 01:41:14
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bugfixes to renderGraph (see NEWS).

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@70119 bc3139a8-67e5-0310-9ffc-ced21a209358

Kasper D. Hansen authored on 03/10/2012 01:12:25
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removed border.lwd, border.col. This fixes a long standing bug

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@70064 bc3139a8-67e5-0310-9ffc-ced21a209358

Kasper D. Hansen authored on 02/10/2012 03:41:05
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bump package versions after creating 2.11 branch

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@70052 bc3139a8-67e5-0310-9ffc-ced21a209358

Dan Tenenbaum authored on 01/10/2012 22:43:56
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    Florian Hahne, Deepayan Sarkar, Kasper Daniel Hansen
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Bump all packages before creating 2.11 branch.

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@70050 bc3139a8-67e5-0310-9ffc-ced21a209358

Dan Tenenbaum authored on 01/10/2012 22:16:24
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updated LICENSE

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@69761 bc3139a8-67e5-0310-9ffc-ced21a209358

Kasper D. Hansen authored on 24/09/2012 17:29:39
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small bugfix for the plot method and renderGraph; now uses sum(mheight), sum(sheight)

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@69025 bc3139a8-67e5-0310-9ffc-ced21a209358

Kasper D. Hansen authored on 03/09/2012 00:18:44
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    Florian Hahne, Deepayan Sarkar, Kasper Daniel Hansen
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bugfix for packages importing Rgraphviz, and not depending on it

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@68995 bc3139a8-67e5-0310-9ffc-ced21a209358

Kasper D. Hansen authored on 31/08/2012 18:35:27
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Bumping version

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@68972 bc3139a8-67e5-0310-9ffc-ced21a209358

Kasper D. Hansen authored on 30/08/2012 20:43:52
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fixed dependence on XML (graph::fromGXL is really the one in need of fix)

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@68943 bc3139a8-67e5-0310-9ffc-ced21a209358

Kasper D. Hansen authored on 30/08/2012 03:51:10
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fixed bug with par(mfrow = c(1,2)) [thanks to David meyer for reporting]

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@68941 bc3139a8-67e5-0310-9ffc-ced21a209358

Kasper D. Hansen authored on 30/08/2012 03:43:56
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style in DESCRIPTION

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@68905 bc3139a8-67e5-0310-9ffc-ced21a209358

Kasper D. Hansen authored on 29/08/2012 15:56:25
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version bump and removed mention of Rgraphviz2 from code

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@68904 bc3139a8-67e5-0310-9ffc-ced21a209358

Kasper D. Hansen authored on 29/08/2012 15:45:17
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Imported Rgraphviz/* from Rgraphviz2

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@68899 bc3139a8-67e5-0310-9ffc-ced21a209358

Kasper D. Hansen authored on 29/08/2012 15:27:21
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 Description: Interfaces R with the AT and T graphviz library for
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         plotting R graph objects from the graph package. Users on all
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         platforms must install graphviz; see the README file,
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         available in the source distribution of this file, for
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         details.
8 
-Version: 1.35.3
9 
-Author: Jeff Gentry, Li Long, Robert Gentleman, Seth,
10 
-   Florian Hahne, Deepayan Sarkar, Kasper Hansen
11 
-Maintainer: Kasper Hansen <khansen@jhsph.edu>
8 
+Version: 1.9.8
9 
+Author: Jeff Gentry, Li Long, Robert Gentleman, Seth Falcon,
10 
+   Florian Hahne, Deepayan Sarkar, Kasper Daniel Hansen
11 
+Maintainer: Kasper Daniel Hansen <khansen@jhsph.edu>
12 12 
 Depends: R (>= 2.6.0), methods, utils, graph, grid
13 
-Imports: stats4, graph, graphics, grDevices, grid,
14 
-        methods, utils
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-SystemRequirements: Graphviz version >= 2.2
13 
+Imports: stats4, graph, graphics, grDevices, grid, methods, utils
14 
+Suggests: RUnit, BiocGenerics
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+SystemRequirements: Graphviz version >= 2.16
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+GraphvizDetails: Graphviz 2.28.0
16 17 
 License: Artistic-2.0
17 18 
 LazyLoad: Yes
18 19 
 Collate: AllGenerics.R
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 	 AllClasses.R
20 
-	 Ragraph.R
21 
-	 defaultAttrs.R
22 
-	 graph.R
23 
-	 makeNodeAttrs.R
24 
-	 Rgraphviz.R
25 
-	 ellipse.R
21 
+	 SimpleMethods.R
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+	 graphvizVersion.R
23 
+	 graphviz_build_version.R
24 
+	 agfunctions.R
25 
+         attrs.R
26 
+	 graphLayout.R
27 
+	 plotGraph.R
28 
+	 plotUtils.R
26 29 
 	 layoutGraph.R
27 
-	 pieGlyph.R
28 
-	 gcneData.R
29 
-	 LL_funcs.R
30 
-	 plot.R
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 	 renderGraph.R
32 
-	 graphviz_build_version.R
31 
+	 graph_methods.R
32 
+	 writers.R
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  	 zzz.R
34 34 
 biocViews: GraphsAndNetworks, NetworkVisualization
Browse code

bugfix for defaultAttrs

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@68452 bc3139a8-67e5-0310-9ffc-ced21a209358

Kasper D. Hansen authored on 14/08/2012 17:01:15
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DESCRIPTION
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@@ -5,7 +5,7 @@ Description: Interfaces R with the AT and T graphviz library for
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         platforms must install graphviz; see the README file,
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         available in the source distribution of this file, for
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         details.
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-Version: 1.35.2
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+Version: 1.35.3
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 Author: Jeff Gentry, Li Long, Robert Gentleman, Seth,
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    Florian Hahne, Deepayan Sarkar, Kasper Hansen
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 Maintainer: Kasper Hansen <khansen@jhsph.edu>
Browse code

updated README to discuss installing 64-bit graphviz

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@66399 bc3139a8-67e5-0310-9ffc-ced21a209358

Dan Tenenbaum authored on 04/06/2012 17:34:26
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DESCRIPTION
History View file @214f1c39
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@@ -5,7 +5,7 @@ Description: Interfaces R with the AT and T graphviz library for
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         platforms must install graphviz; see the README file,
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         available in the source distribution of this file, for
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         details.
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-Version: 1.35.1
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+Version: 1.35.2
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 Author: Jeff Gentry, Li Long, Robert Gentleman, Seth,
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    Florian Hahne, Deepayan Sarkar, Kasper Hansen
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 Maintainer: Kasper Hansen <khansen@jhsph.edu>
Browse code

undated biocViews

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@65525 bc3139a8-67e5-0310-9ffc-ced21a209358

Paul Shannon authored on 27/04/2012 21:39:13
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DESCRIPTION
History View file @bc21cd7a
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@@ -5,7 +5,7 @@ Description: Interfaces R with the AT and T graphviz library for
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         platforms must install graphviz; see the README file,
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         available in the source distribution of this file, for
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         details.
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-Version: 1.35.0
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+Version: 1.35.1
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 Author: Jeff Gentry, Li Long, Robert Gentleman, Seth,
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    Florian Hahne, Deepayan Sarkar, Kasper Hansen
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 Maintainer: Kasper Hansen <khansen@jhsph.edu>
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@@ -31,4 +31,4 @@ Collate: AllGenerics.R
31 31 
 	 renderGraph.R
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 	 graphviz_build_version.R
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  	 zzz.R
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-biocViews: GraphsAndNetworks
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+biocViews: GraphsAndNetworks, NetworkVisualization
Browse code

bumped version numbers after creating 2.10 branch

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@64680 bc3139a8-67e5-0310-9ffc-ced21a209358

Dan Tenenbaum authored on 30/03/2012 22:15:56
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DESCRIPTION
History View file @80722f81
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@@ -5,7 +5,7 @@ Description: Interfaces R with the AT and T graphviz library for
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         platforms must install graphviz; see the README file,
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         available in the source distribution of this file, for
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         details.
8 
-Version: 1.34.0
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+Version: 1.35.0
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 Author: Jeff Gentry, Li Long, Robert Gentleman, Seth,
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    Florian Hahne, Deepayan Sarkar, Kasper Hansen
11 11 
 Maintainer: Kasper Hansen <khansen@jhsph.edu>
Browse code

first version bump prior to creating 2.10 branch

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@64678 bc3139a8-67e5-0310-9ffc-ced21a209358

Dan Tenenbaum authored on 30/03/2012 22:05:02
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DESCRIPTION
History View file @bd4db0c4
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@@ -5,7 +5,7 @@ Description: Interfaces R with the AT and T graphviz library for
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         platforms must install graphviz; see the README file,
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         available in the source distribution of this file, for
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         details.
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-Version: 1.33.4
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+Version: 1.34.0
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 Author: Jeff Gentry, Li Long, Robert Gentleman, Seth,
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    Florian Hahne, Deepayan Sarkar, Kasper Hansen
11 11 
 Maintainer: Kasper Hansen <khansen@jhsph.edu>
Browse code

added ability to specify border color and width for nodes, courtesy of Nima Aghaeepour (naghaeep@bccrc.ca)

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@63437 bc3139a8-67e5-0310-9ffc-ced21a209358

Kasper D. Hansen authored on 04/03/2012 17:22:28
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DESCRIPTION
History View file @764d84c0
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@@ -5,7 +5,7 @@ Description: Interfaces R with the AT and T graphviz library for
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         platforms must install graphviz; see the README file,
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         available in the source distribution of this file, for
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         details.
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-Version: 1.33.3
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+Version: 1.33.4
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 Author: Jeff Gentry, Li Long, Robert Gentleman, Seth,
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    Florian Hahne, Deepayan Sarkar, Kasper Hansen
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 Maintainer: Kasper Hansen <khansen@jhsph.edu>
Browse code

update plot import to stats4

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@63402 bc3139a8-67e5-0310-9ffc-ced21a209358

Martin Morgan authored on 03/03/2012 15:21:26
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DESCRIPTION
History View file @f20c14a4
... ... 
@@ -5,12 +5,12 @@ Description: Interfaces R with the AT and T graphviz library for
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         platforms must install graphviz; see the README file,
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         available in the source distribution of this file, for
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         details.
8 
-Version: 1.33.2
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+Version: 1.33.3
9 9 
 Author: Jeff Gentry, Li Long, Robert Gentleman, Seth,
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    Florian Hahne, Deepayan Sarkar, Kasper Hansen
11 11 
 Maintainer: Kasper Hansen <khansen@jhsph.edu>
12 12 
 Depends: R (>= 2.6.0), methods, utils, graph, grid
13 
-Imports: BiocGenerics (>= 0.1.6), graph, graphics, grDevices, grid,
13 
+Imports: stats4, graph, graphics, grDevices, grid,
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         methods, utils
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 SystemRequirements: Graphviz version >= 2.2
16 16 
 License: Artistic-2.0
Browse code

use plot S4 generic from BiocGenerics

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@63194 bc3139a8-67e5-0310-9ffc-ced21a209358

Martin Morgan authored on 26/02/2012 15:41:11
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DESCRIPTION
History View file @93902c9e
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@@ -5,12 +5,13 @@ Description: Interfaces R with the AT and T graphviz library for
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         platforms must install graphviz; see the README file,
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         available in the source distribution of this file, for
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         details.
8 
-Version: 1.33.1
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+Version: 1.33.2
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 Author: Jeff Gentry, Li Long, Robert Gentleman, Seth,
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    Florian Hahne, Deepayan Sarkar, Kasper Hansen
11 11 
 Maintainer: Kasper Hansen <khansen@jhsph.edu>
12 12 
 Depends: R (>= 2.6.0), methods, utils, graph, grid
13 
-Imports: graph, graphics, grDevices, grid, methods, utils
13 
+Imports: BiocGenerics (>= 0.1.6), graph, graphics, grDevices, grid,
14 
+        methods, utils
14 15 
 SystemRequirements: Graphviz version >= 2.2
15 16 
 License: Artistic-2.0
16 17 
 LazyLoad: Yes
Browse code

updated DESCRIPTION

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@62154 bc3139a8-67e5-0310-9ffc-ced21a209358

Kasper D. Hansen authored on 19/01/2012 21:49:54
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DESCRIPTION
History View file @528761ce
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@@ -5,7 +5,7 @@ Description: Interfaces R with the AT and T graphviz library for
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         platforms must install graphviz; see the README file,
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         available in the source distribution of this file, for
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         details.
8 
-Version: 1.33.0
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+Version: 1.33.1
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 Author: Jeff Gentry, Li Long, Robert Gentleman, Seth,
10 10 
    Florian Hahne, Deepayan Sarkar, Kasper Hansen
11 11 
 Maintainer: Kasper Hansen <khansen@jhsph.edu>
Browse code

version bump for start of 2.10 development cycle

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@59924 bc3139a8-67e5-0310-9ffc-ced21a209358

Dan Tenenbaum authored on 31/10/2011 23:12:28
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DESCRIPTION
History View file @a6677505
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@@ -5,7 +5,7 @@ Description: Interfaces R with the AT and T graphviz library for
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         platforms must install graphviz; see the README file,
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         available in the source distribution of this file, for
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         details.
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-Version: 1.32.0
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+Version: 1.33.0
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 Author: Jeff Gentry, Li Long, Robert Gentleman, Seth,
10 10 
    Florian Hahne, Deepayan Sarkar, Kasper Hansen
11 11 
 Maintainer: Kasper Hansen <khansen@jhsph.edu>
Browse code

bumped package version numbers prior to creating 2.9 branch

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@59920 bc3139a8-67e5-0310-9ffc-ced21a209358

Dan Tenenbaum authored on 31/10/2011 22:59:03
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DESCRIPTION
History View file @c5c927e6
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@@ -5,7 +5,7 @@ Description: Interfaces R with the AT and T graphviz library for
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         platforms must install graphviz; see the README file,
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         available in the source distribution of this file, for
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         details.
8 
-Version: 1.31.3
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+Version: 1.32.0
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 Author: Jeff Gentry, Li Long, Robert Gentleman, Seth,
10 10 
    Florian Hahne, Deepayan Sarkar, Kasper Hansen
11 11 
 Maintainer: Kasper Hansen <khansen@jhsph.edu>
Browse code

updated .onLoad with fixes (thanks to Brian Ripley)

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@58704 bc3139a8-67e5-0310-9ffc-ced21a209358

Kasper D. Hansen authored on 03/10/2011 12:22:59
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DESCRIPTION
History View file @a1fd8d06
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@@ -5,7 +5,7 @@ Description: Interfaces R with the AT and T graphviz library for
5 5 
         platforms must install graphviz; see the README file,
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         available in the source distribution of this file, for
7 7 
         details.
8 
-Version: 1.31.2
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+Version: 1.31.3
9 9 
 Author: Jeff Gentry, Li Long, Robert Gentleman, Seth,
10 10 
    Florian Hahne, Deepayan Sarkar, Kasper Hansen
11 11 
 Maintainer: Kasper Hansen <khansen@jhsph.edu>
Browse code

bumped version and removed emails from authors; updated email for maintainer

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@58471 bc3139a8-67e5-0310-9ffc-ced21a209358

Kasper D. Hansen authored on 27/09/2011 12:17:44
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DESCRIPTION
History View file @5d62ac85
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@@ -5,12 +5,10 @@ Description: Interfaces R with the AT and T graphviz library for
5 5 
         platforms must install graphviz; see the README file,
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         available in the source distribution of this file, for
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         details.
8 
-Version: 1.31.1
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-Author: Jeff Gentry <jgentry@jimmy.harvard.edu>, Li Long <li.long@isb-sib.ch>,
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-   Robert Gentleman <rgentlem@fhcrc.org>, Seth Falcon <sfalcon@fhcrc.org>,
11 
-   Florian Hahne <fhahne@fhcrc.org>, Deepayan Sarkar <dsarkar@fhcrc.org>,
12 
-   Kasper Hansen <khansen@stat.berkeley.edu>
13 
-Maintainer: Kasper Hansen <khansen@stat.berkeley.edu>
8 
+Version: 1.31.2
9 
+Author: Jeff Gentry, Li Long, Robert Gentleman, Seth,
10 
+   Florian Hahne, Deepayan Sarkar, Kasper Hansen
11 
+Maintainer: Kasper Hansen <khansen@jhsph.edu>
14 12 
 Depends: R (>= 2.6.0), methods, utils, graph, grid
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 Imports: graph, graphics, grDevices, grid, methods, utils
16 14 
 SystemRequirements: Graphviz version >= 2.2
Browse code

adjust configure.win dll versions; tidy README

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@55242 bc3139a8-67e5-0310-9ffc-ced21a209358

Martin Morgan authored on 04/05/2011 03:37:26
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DESCRIPTION
History View file @f59ca49d
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@@ -5,7 +5,7 @@ Description: Interfaces R with the AT and T graphviz library for
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         platforms must install graphviz; see the README file,
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         available in the source distribution of this file, for
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         details.
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-Version: 1.31.0
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+Version: 1.31.1
9 9 
 Author: Jeff Gentry <jgentry@jimmy.harvard.edu>, Li Long <li.long@isb-sib.ch>,
10 10 
    Robert Gentleman <rgentlem@fhcrc.org>, Seth Falcon <sfalcon@fhcrc.org>,
11 11 
    Florian Hahne <fhahne@fhcrc.org>, Deepayan Sarkar <dsarkar@fhcrc.org>,
Browse code

Bumped version numbers again for new BioC 2.9 devel cycle.

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@54802 bc3139a8-67e5-0310-9ffc-ced21a209358

Dan Tenenbaum authored on 13/04/2011 22:36:43
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DESCRIPTION
History View file @bedf1b49
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@@ -5,7 +5,7 @@ Description: Interfaces R with the AT and T graphviz library for
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         available in the source distribution of this file, for
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         details.
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-Version: 1.30.0
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+Version: 1.31.0
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 Author: Jeff Gentry <jgentry@jimmy.harvard.edu>, Li Long <li.long@isb-sib.ch>,
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    Robert Gentleman <rgentlem@fhcrc.org>, Seth Falcon <sfalcon@fhcrc.org>,
11 11 
    Florian Hahne <fhahne@fhcrc.org>, Deepayan Sarkar <dsarkar@fhcrc.org>,
Browse code

Bumped version numbers for BioC 2.8 release.

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@54800 bc3139a8-67e5-0310-9ffc-ced21a209358

Dan Tenenbaum authored on 13/04/2011 22:27:35
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DESCRIPTION
History View file @e299621b
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@@ -5,7 +5,7 @@ Description: Interfaces R with the AT and T graphviz library for
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         available in the source distribution of this file, for
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         details.
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-Version: 1.29.0
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+Version: 1.30.0
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 Author: Jeff Gentry <jgentry@jimmy.harvard.edu>, Li Long <li.long@isb-sib.ch>,
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    Robert Gentleman <rgentlem@fhcrc.org>, Seth Falcon <sfalcon@fhcrc.org>,
11 11 
    Florian Hahne <fhahne@fhcrc.org>, Deepayan Sarkar <dsarkar@fhcrc.org>,
Browse code

Bumped version numbers again for new BioC 2.8 devel cycle. ERRATA: Previous bump was for BioC 2.7 release (of course), not 2.6!

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@50295 bc3139a8-67e5-0310-9ffc-ced21a209358

Herve Pages authored on 18/10/2010 05:57:44
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DESCRIPTION
History View file @69c6c979
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@@ -5,7 +5,7 @@ Description: Interfaces R with the AT and T graphviz library for
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         available in the source distribution of this file, for
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         details.
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-Version: 1.28.0
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+Version: 1.29.0
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 Author: Jeff Gentry <jgentry@jimmy.harvard.edu>, Li Long <li.long@isb-sib.ch>,
10 10 
    Robert Gentleman <rgentlem@fhcrc.org>, Seth Falcon <sfalcon@fhcrc.org>,
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    Florian Hahne <fhahne@fhcrc.org>, Deepayan Sarkar <dsarkar@fhcrc.org>,
Browse code

Bumped version numbers for BioC 2.6 release

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@50293 bc3139a8-67e5-0310-9ffc-ced21a209358

Herve Pages authored on 18/10/2010 05:34:23
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DESCRIPTION
History View file @d15194ce
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@@ -5,7 +5,7 @@ Description: Interfaces R with the AT and T graphviz library for
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         platforms must install graphviz; see the README file,
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         available in the source distribution of this file, for
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         details.
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-Version: 1.27.0
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+Version: 1.28.0
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 Author: Jeff Gentry <jgentry@jimmy.harvard.edu>, Li Long <li.long@isb-sib.ch>,
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    Robert Gentleman <rgentlem@fhcrc.org>, Seth Falcon <sfalcon@fhcrc.org>,
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    Florian Hahne <fhahne@fhcrc.org>, Deepayan Sarkar <dsarkar@fhcrc.org>,
Browse code

Bumped version numbers for BioC 2.7 trunk

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@46405 bc3139a8-67e5-0310-9ffc-ced21a209358

Patrick Aboyoun authored on 22/04/2010 18:45:15
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DESCRIPTION
History View file @94f32446
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@@ -5,7 +5,7 @@ Description: Interfaces R with the AT and T graphviz library for
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         available in the source distribution of this file, for
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         details.
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-Version: 1.26.0
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+Version: 1.27.0
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 Author: Jeff Gentry <jgentry@jimmy.harvard.edu>, Li Long <li.long@isb-sib.ch>,
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    Robert Gentleman <rgentlem@fhcrc.org>, Seth Falcon <sfalcon@fhcrc.org>,
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    Florian Hahne <fhahne@fhcrc.org>, Deepayan Sarkar <dsarkar@fhcrc.org>,
Browse code

Bumped version numbers for BioC 2.6 release

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@46401 bc3139a8-67e5-0310-9ffc-ced21a209358

Patrick Aboyoun authored on 22/04/2010 18:21:23
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DESCRIPTION
History View file @84ae307c
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@@ -5,7 +5,7 @@ Description: Interfaces R with the AT and T graphviz library for
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         available in the source distribution of this file, for
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         details.
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-Version: 1.25.2
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+Version: 1.26.0
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 Author: Jeff Gentry <jgentry@jimmy.harvard.edu>, Li Long <li.long@isb-sib.ch>,
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    Robert Gentleman <rgentlem@fhcrc.org>, Seth Falcon <sfalcon@fhcrc.org>,
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    Florian Hahne <fhahne@fhcrc.org>, Deepayan Sarkar <dsarkar@fhcrc.org>,
Browse code

Fix missing PROTECT before calling asChar

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@46229 bc3139a8-67e5-0310-9ffc-ced21a209358

Seth Falcon authored on 19/04/2010 19:37:56
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DESCRIPTION
History View file @c83811ee
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@@ -5,9 +5,9 @@ Description: Interfaces R with the AT and T graphviz library for
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         platforms must install graphviz; see the README file,
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         details.
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-Version: 1.25.1
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+Version: 1.25.2
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 Author: Jeff Gentry <jgentry@jimmy.harvard.edu>, Li Long <li.long@isb-sib.ch>,
10 
-   Robert Gentleman <rgentlem@fhcrc.org>, Seth Falcon <sethf@fhcrc.org>,
10 
+   Robert Gentleman <rgentlem@fhcrc.org>, Seth Falcon <sfalcon@fhcrc.org>,
11 11 
    Florian Hahne <fhahne@fhcrc.org>, Deepayan Sarkar <dsarkar@fhcrc.org>,
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    Kasper Hansen <khansen@stat.berkeley.edu>
13 13 
 Maintainer: Kasper Hansen <khansen@stat.berkeley.edu>
Browse code

.onLoad for Rgraphviz dll, to catch load errors more informatively

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@43763 bc3139a8-67e5-0310-9ffc-ced21a209358

Martin Morgan authored on 24/12/2009 13:32:40
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         available in the source distribution of this file, for
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         details.
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-Version: 1.25.0
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+Version: 1.25.1
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 Author: Jeff Gentry <jgentry@jimmy.harvard.edu>, Li Long <li.long@isb-sib.ch>,
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    Robert Gentleman <rgentlem@fhcrc.org>, Seth Falcon <sethf@fhcrc.org>,
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    Florian Hahne <fhahne@fhcrc.org>, Deepayan Sarkar <dsarkar@fhcrc.org>,
Browse code

Package version bump for BioC 2.6 devel.

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@42686 bc3139a8-67e5-0310-9ffc-ced21a209358

Patrick Aboyoun authored on 27/10/2009 23:45:24
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         platforms must install graphviz; see the README file,
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         details.
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-Version: 1.24.0
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+Version: 1.25.0
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 Author: Jeff Gentry <jgentry@jimmy.harvard.edu>, Li Long <li.long@isb-sib.ch>,
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    Robert Gentleman <rgentlem@fhcrc.org>, Seth Falcon <sethf@fhcrc.org>,
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    Florian Hahne <fhahne@fhcrc.org>, Deepayan Sarkar <dsarkar@fhcrc.org>,
Browse code

Package version bump for BioC 2.5 release.

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@42684 bc3139a8-67e5-0310-9ffc-ced21a209358

Patrick Aboyoun authored on 27/10/2009 23:33:29
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         details.
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-Version: 1.23.7
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+Version: 1.24.0
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 Author: Jeff Gentry <jgentry@jimmy.harvard.edu>, Li Long <li.long@isb-sib.ch>,
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    Robert Gentleman <rgentlem@fhcrc.org>, Seth Falcon <sethf@fhcrc.org>,
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    Florian Hahne <fhahne@fhcrc.org>, Deepayan Sarkar <dsarkar@fhcrc.org>,
Browse code

Rolled back to using Graphviz 2.20.3.1 on the Windows build machines and updated README consequently. Bumped version to 1.23.7

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@42640 bc3139a8-67e5-0310-9ffc-ced21a209358

Herve Pages authored on 26/10/2009 06:24:38
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         details.
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-Version: 1.23.6
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+Version: 1.23.7
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 Author: Jeff Gentry <jgentry@jimmy.harvard.edu>, Li Long <li.long@isb-sib.ch>,
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    Robert Gentleman <rgentlem@fhcrc.org>, Seth Falcon <sethf@fhcrc.org>,
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    Florian Hahne <fhahne@fhcrc.org>, Deepayan Sarkar <dsarkar@fhcrc.org>,
Browse code

Updated README to indicate new Graphviz version (2.24) used on the Windows build machine. Bumped version to 1.23.6

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@42337 bc3139a8-67e5-0310-9ffc-ced21a209358

Herve Pages authored on 13/10/2009 00:59:36
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         details.
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-Version: 1.23.5
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+Version: 1.23.6
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 Author: Jeff Gentry <jgentry@jimmy.harvard.edu>, Li Long <li.long@isb-sib.ch>,
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    Robert Gentleman <rgentlem@fhcrc.org>, Seth Falcon <sethf@fhcrc.org>,
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    Florian Hahne <fhahne@fhcrc.org>, Deepayan Sarkar <dsarkar@fhcrc.org>,
Browse code

Fixed R CMD check warnings caused by suspect links in documentation objects. Bumped version number.

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@41759 bc3139a8-67e5-0310-9ffc-ced21a209358

Chao-Jen Wong authored on 19/09/2009 00:10:18
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         details.
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-Version: 1.23.4
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+Version: 1.23.5
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 Author: Jeff Gentry <jgentry@jimmy.harvard.edu>, Li Long <li.long@isb-sib.ch>,
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    Robert Gentleman <rgentlem@fhcrc.org>, Seth Falcon <sethf@fhcrc.org>,
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    Florian Hahne <fhahne@fhcrc.org>, Deepayan Sarkar <dsarkar@fhcrc.org>,
Browse code

fixing docs

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@40529 bc3139a8-67e5-0310-9ffc-ced21a209358

Florian Hahne authored on 06/07/2009 19:38:30
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         platforms must install graphviz; see the README file,
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         available in the source distribution of this file, for
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         details.
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-Version: 1.23.3
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+Version: 1.23.4
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 Author: Jeff Gentry <jgentry@jimmy.harvard.edu>, Li Long <li.long@isb-sib.ch>,
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    Robert Gentleman <rgentlem@fhcrc.org>, Seth Falcon <sethf@fhcrc.org>,
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    Florian Hahne <fhahne@fhcrc.org>, Deepayan Sarkar <dsarkar@fhcrc.org>,
Browse code

Fixed a configure bug, updated README

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@40439 bc3139a8-67e5-0310-9ffc-ced21a209358

Kasper D. Hansen authored on 01/07/2009 04:44:03
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         details.
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-Version: 1.23.2
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+Version: 1.23.3
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 Author: Jeff Gentry <jgentry@jimmy.harvard.edu>, Li Long <li.long@isb-sib.ch>,
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    Robert Gentleman <rgentlem@fhcrc.org>, Seth Falcon <sethf@fhcrc.org>,
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    Florian Hahne <fhahne@fhcrc.org>, Deepayan Sarkar <dsarkar@fhcrc.org>,
Browse code

Cleaned up Rgraphviz to work with latest version of graph. (graph had to change the name of its dll to not conflict with graphviz dll.)

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@39123 bc3139a8-67e5-0310-9ffc-ced21a209358

Patrick Aboyoun authored on 24/04/2009 23:00:30
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@@ -5,14 +5,14 @@ Description: Interfaces R with the AT and T graphviz library for
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         available in the source distribution of this file, for
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         details.
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-Version: 1.23.1
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+Version: 1.23.2
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 Author: Jeff Gentry <jgentry@jimmy.harvard.edu>, Li Long <li.long@isb-sib.ch>,
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    Robert Gentleman <rgentlem@fhcrc.org>, Seth Falcon <sethf@fhcrc.org>,
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    Florian Hahne <fhahne@fhcrc.org>, Deepayan Sarkar <dsarkar@fhcrc.org>,
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    Kasper Hansen <khansen@stat.berkeley.edu>
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 Maintainer: Kasper Hansen <khansen@stat.berkeley.edu>
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 Depends: R (>= 2.6.0), methods, utils, graph, grid
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-Imports: utils
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+Imports: graph, graphics, grDevices, grid, methods, utils
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 SystemRequirements: Graphviz version >= 2.2
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 License: Artistic-2.0
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 LazyLoad: Yes
Browse code

Fixed some issues related to using graphviz 2.22 on Windows

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@39074 bc3139a8-67e5-0310-9ffc-ced21a209358

Kasper D. Hansen authored on 22/04/2009 18:30:54
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         available in the source distribution of this file, for
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         details.
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-Version: 1.23.0
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+Version: 1.23.1
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 Author: Jeff Gentry <jgentry@jimmy.harvard.edu>, Li Long <li.long@isb-sib.ch>,
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    Robert Gentleman <rgentlem@fhcrc.org>, Seth Falcon <sethf@fhcrc.org>,
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-   Florian Hahne <fhahne@fhcrc.org>, Deepayan Sarkar <dsarkar@fhcrc.org>
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-Maintainer: Kasper Hansen <khansen@stat.Berkeley.EDU>
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+   Florian Hahne <fhahne@fhcrc.org>, Deepayan Sarkar <dsarkar@fhcrc.org>,
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+   Kasper Hansen <khansen@stat.berkeley.edu>
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+Maintainer: Kasper Hansen <khansen@stat.berkeley.edu>
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 Depends: R (>= 2.6.0), methods, utils, graph, grid
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 Imports: utils
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 SystemRequirements: Graphviz version >= 2.2
Browse code

Bumped pkg versions for BioC 2.5 devel line.

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@39015 bc3139a8-67e5-0310-9ffc-ced21a209358

Patrick Aboyoun authored on 20/04/2009 23:44:07
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         details.
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-Version: 1.22.0
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+Version: 1.23.0
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 Author: Jeff Gentry <jgentry@jimmy.harvard.edu>, Li Long <li.long@isb-sib.ch>,
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    Robert Gentleman <rgentlem@fhcrc.org>, Seth Falcon <sethf@fhcrc.org>,
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    Florian Hahne <fhahne@fhcrc.org>, Deepayan Sarkar <dsarkar@fhcrc.org>
Browse code

Bumped pkg versions for BioC 2.4 release.

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@39013 bc3139a8-67e5-0310-9ffc-ced21a209358

Patrick Aboyoun authored on 20/04/2009 23:24:12
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         details.
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-Version: 1.21.13
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+Version: 1.22.0
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 Author: Jeff Gentry <jgentry@jimmy.harvard.edu>, Li Long <li.long@isb-sib.ch>,
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    Robert Gentleman <rgentlem@fhcrc.org>, Seth Falcon <sethf@fhcrc.org>,
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    Florian Hahne <fhahne@fhcrc.org>, Deepayan Sarkar <dsarkar@fhcrc.org>
Browse code

reverting back to old arrow heads for now

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rgraphviz@38995 bc3139a8-67e5-0310-9ffc-ced21a209358

Florian Hahne authored on 20/04/2009 14:22:22
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