1. ReportingTools
  2. Graph
Graph of ReportingTools
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  • 57f40e0 (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:24:14 -0400;
  • 808af36 (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:24:14 -0400;
  • 07335dd bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:07:25 -0400;
  • 5c4971e (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:07:25 -0400;
  • 7941f76 bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:12:11 +0000;
  • 34122d4 (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:12:11 +0000;
  • d3a5ca7 bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:04:45 +0000;
  • fb5aef0 (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:04:45 +0000;
  • 2ead986 Updating dependencies, take two by Jason A. Hackney <hackney.jason@gene.com> 2021-07-30 08:38:45 -0700;
  • fd3bac9 Updating dependencies by Jason A. Hackney <hackney.jason@gene.com> 2021-07-26 14:57:00 -0700;
  • 158e4a4 (origin/RELEASE_3_13, RELEASE_3_13) Updating dependencies by Jason A. Hackney <hackney.jason@gene.com> 2021-07-26 14:54:42 -0700;
  • 9258c27 bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 15:54:01 +0000;
  • 42a063c bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 15:54:01 +0000;
  • d0b7f53 (origin/RELEASE_3_12, RELEASE_3_12) Fixing broken test by Jason Hackney - Regular <jasonah@nc002.eth.ghpc1.sc1.roche.com> 2021-03-08 11:30:05 -0800;
  • 4bd6fda Bumping version by Jason Hackney <hackney.jason@gene.com> 2021-02-10 13:49:31 -0800;
  • 248318d Reworking using pasilla data by Jason Hackney <hackney.jason@gene.com> 2020-12-07 11:22:16 -0800;
  • f425ec2 Updating hwriter link to CRAN page by Jason Hackney <hackney.jason@gene.com> 2021-02-10 13:20:03 -0800;
  • 0edf4a1 Updating tests a bit more by Jason Hackney <hackney.jason@gene.com> 2020-12-07 11:50:43 -0800;
  • 8349820 Reworking using pasilla data by Jason Hackney <hackney.jason@gene.com> 2020-12-07 11:22:16 -0800;
  • 6d33323 Merge branch 'master' of git.bioconductor.org:packages/ReportingTools by Jason Hackney <hackney.jason@gene.com> 2020-11-30 10:16:41 -0800;
  • 19a78e5 Removing some DESeq associated code by Jason Hackney <hackney.jason@gene.com> 2020-11-30 10:14:29 -0800;
  • 63e470a Removing DESeq oriented code by Jason Hackney <hackney.jason@gene.com> 2020-11-30 10:13:43 -0800;
  • d64c62d bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 10:47:24 -0400;
  • fb9aee4 bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 10:47:24 -0400;
  • 13a1a4f bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:31:22 +0000;
  • 40efcf5 (origin/RELEASE_3_11, RELEASE_3_11) bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:31:22 +0000;
  • 56ede03 bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:36:23 -0400;
  • 26d68bd (origin/RELEASE_3_10, RELEASE_3_10) bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:08:34 -0400;
  • 3a26054 Update DESCRIPTION by Jason Hackney <hackney.jason@gene.com> 2019-05-22 09:14:23 -0700;
  • a4cc249 Merge branch 'master' of git.bioconductor.org:packages/ReportingTools need to update toReportDF in bioconductor version by Jason Hackney <hackney.jason@gene.com> 2019-05-22 09:11:03 -0700;
  • 01032c1 Update toReportDF with keytype by Jason Hackney <hackney.jason@gene.com> 2019-05-22 09:04:31 -0700;
  • db3d6c8 bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 12:11:14 -0400;
  • d114c65 (origin/RELEASE_3_9, RELEASE_3_9) bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 11:53:38 -0400;
  • dce6af6 (origin/RELEASE_3_8, RELEASE_3_8) Add ImmunoOncology biocViews term by Kayla-Morrell <kayla.morrell@roswellpark.org> 2019-01-04 13:46:47 -0500;
  • 279f186 Add ImmunoOncology biocViews term by Kayla-Morrell <kayla.morrell@roswellpark.org> 2019-01-04 13:46:42 -0500;
  • 1198fe6 bump x.y.z versions to odd y after creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:54:30 -0400;
  • dd9c686 bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:41:49 -0400;
  • 7500c69 Update NEWS file to proper formatting by lshep <shepherl@gmail.com> 2018-06-12 09:37:08 -0400;
  • 404fd09 bump x.y.z versions to odd y after creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:41:39 -0400;
  • 77e14ae (origin/RELEASE_3_7, RELEASE_3_7) bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:35:27 -0400;
  • b2e379c (origin/RELEASE_3_6, RELEASE_3_6) updating version number by JasonHackney <31082488+JasonHackney@users.noreply.github.com> 2017-11-17 10:49:45 -0800;
  • 754d262 Updating version number by JasonHackney <31082488+JasonHackney@users.noreply.github.com> 2017-11-17 10:43:11 -0800;
  • a743f89 Merge branch 'master' of git.bioconductor.org:packages/ReportingTools by JasonHackney <31082488+JasonHackney@users.noreply.github.com> 2017-11-13 11:41:02 -0800;
  • 533fff6 Fixing a bug in edgeR reporting by JasonHackney <31082488+JasonHackney@users.noreply.github.com> 2017-11-13 11:27:22 -0800;
  • 665ea18 bump x.y.z versions to odd y after creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:52:26 -0400;
  • 77db3be bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:39:51 -0400;
  • 87c70d9 Removing conflict tag from Link.Rd by JasonHackney <31082488+JasonHackney@users.noreply.github.com> 2017-09-01 11:24:01 -0700;
  • 09b3e08 Fixing a bug in unit tests related to the pasilla data set by Jason A. Hackney <hackney.jason@gene.com> 2017-07-25 20:25:37 +0000;
  • 187ac1c Renaming levels for library type in the pasilla data set. by Jason A. Hackney <hackney.jason@gene.com> 2017-07-25 03:56:06 +0000;
  • 2f51466 bump x.y.z versions to odd y after creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:50:57 +0000;
  • b1aa0ea (origin/RELEASE_3_5, RELEASE_3_5) Creating branch for BioC 3.5 release by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:45:44 +0000;
  • ce16b89 bump x.y.z versions to even y prior to creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:25:24 +0000;
  • 7c224f9 Fixed a bug in toReportDF for DESeqResults, which failed to select the appropriate column Fixed bugs in DESeqDataSet unit tests, which failed to get the contrasts by Jason A. Hackney <hackney.jason@gene.com> 2017-04-19 21:05:41 +0000;
  • 5cfcdcf Fixing a bug where annotation databases without a SYMBOL column couldn’t generate reports for GO or PFAM enrichment tests Adding tests for HyperGResult objects by Jason A. Hackney <hackney.jason@gene.com> 2016-12-04 05:30:29 +0000;
  • d1dc50e bump x.y.z versions to odd 'y' after creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:10:43 +0000;
  • c8ccb05 (origin/RELEASE_3_4, RELEASE_3_4) Creating branch for BioC 3.4 release by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:00:47 +0000;
  • 0ac7d34 bump x.y.z versions to even 'y' prior to creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 18:45:06 +0000;
  • 3486fe6 (origin/RELEASE_3_3, RELEASE_3_3) Version bump to trigger package rebuilding now that purl()'ing issue has been correctly identified. knitr does not create purl()'ed (Stangle equivalent) .R files if _R_CHECK_TIMINGS_ is set, which the build system was setting. Now it's not set, so these .R files are now created. See https://github.com/yihui/knitr/issues/1212 for more. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-15 20:18:19 +0000;
  • 612d831 Version bump to trigger package rebuilding now that purl()'ing issue has been correctly identified. knitr does not create purl()'ed (Stangle equivalent) .R files if _R_CHECK_TIMINGS_ is set, which the build system was setting. Now it's not set, so these .R files are now created. See https://github.com/yihui/knitr/issues/1212 for more. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-15 20:14:22 +0000;
  • e99ca4c Bump version of all packages that use knitr for vignettes. This is because of an issue (now fixed) in knitr which failed to create purl()'ed R files from vignette sources and include them in the package. This version bump will cause these packages to propagate with those R files included. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-11 23:15:25 +0000;
  • 0980398 Bump version of all packages that use knitr for vignettes. This is because of an issue (now fixed) in knitr which failed to create purl()'ed R files from vignette sources and include them in the package. This version bump will cause these packages to propagate with those R files included. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-11 23:05:31 +0000;
  • 0c6e90b bump version after creating 3.3 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:30:44 +0000;
  • 68892c4 Creating branch for BioC 3.3 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:26:31 +0000;
  • a5a2391 Bump versions prior to creation of 3.3 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:20:18 +0000;
  • a673417 Bumped version number of all packages after creation of 3.2 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:59:53 +0000;
  • fa69c91 (origin/RELEASE_3_2, RELEASE_3_2) Creating branch for BioC 3.2 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:57:33 +0000;
  • b9a6d53 Bumped versions of all packages prior to creating 3.2 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:36:05 +0000;
  • fa3dabf Updating coercion to data.frame to work with DataFrame objects Adding a test for this by Jason A. Hackney <hackney.jason@gene.com> 2015-04-27 20:58:13 +0000;
  • d45134d Bump versions in trunk after creation of 3.1 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-04-16 20:02:44 +0000;
  • b927c4f (origin/RELEASE_3_1, RELEASE_3_1) Creating branch for BioC 3.1 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-04-16 20:00:01 +0000;
  • fbdf131 Bump versions prior to creating 3.1 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-04-16 19:42:01 +0000;
  • 0645414 updated JL email by Jessica Larson <larsonj5@gene.com> 2015-03-27 11:24:36 +0000;
  • e704c7d Bumping versions after creating 3.0 release branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-10-13 21:47:41 +0000;
  • e6ef983 (origin/RELEASE_3_0) Creating branch for BioC 3.0 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-10-13 21:46:02 +0000;
  • 4975b8d Bump package versions prior to creating the 3.0 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-10-13 21:38:33 +0000;
  • aaa3496 Fixing image names for sortable and sorted columns in the css by Jason A. Hackney <hackney.jason@gene.com> 2014-07-24 17:04:30 +0000;
  • 3feb6eb Adding utils to Depends by Jason A. Hackney <hackney.jason@gene.com> 2014-06-26 18:17:48 +0000;
  • 653b6fc Fixing getDefaultColumnClasses for data.frame objects: no longer using normalizeSingleBracketSubset Fixing publish method for data.frame objects using old-style HTMLReport objects: no longer using normalizeSingleBracketSubset Removing S4Vectors from Imports and NAMESPACE (since we're not using normalizeSingleBracketSubset) by Jason A. Hackney <hackney.jason@gene.com> 2014-06-17 16:34:02 +0000;
  • f0a72cc biocViews update by Sonali Arora <sarora@fhcrc.org> 2014-06-10 23:30:34 +0000;
  • 1a96e26 need to import normalizeSingleBracketSubscript() from S4Vectors by Herve Pages <hpages@fhcrc.org> 2014-04-27 20:16:22 +0000;
  • 2669fec Second version bump after creating 2.14 release branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-04-11 21:21:21 +0000;
  • 57e9ff5 (origin/RELEASE_2_14, RELEASE_2_14) Creating 2.14 release branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-04-11 21:17:46 +0000;
  • 375a3eb First version bump prior to creating 2.14 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-04-11 21:07:21 +0000;
  • dff07a1 updated vignettes, DESCRIPTION and NEWS for next release by Jessica Larson <larsonj5@gene.com> 2014-04-03 20:53:48 +0000;
  • 8d4b71b vbump to 2.3.7 by Gabriel Becker <becker.gabriel@gene.com> 2014-03-20 15:54:17 +0000;
  • 85d460b no warnings or relevant notes from R CMD CHECK with Ralpha 3.1 by Gabriel Becker <becker.gabriel@gene.com> 2014-03-20 15:54:14 +0000;
  • 73d7be6 modify to new biocViews to DESCRIPTION file by Sonali Arora <sarora@fhcrc.org> 2014-03-04 22:12:21 +0000;
  • ffea35a Adding toReportDF, modifyReportDF and publish methods for DESeqResults objects. Fixing toReportDF, modifyReportDF and publish methods for DESeqDataSet to use the results method in DESeq2 >= 1.3.41 Changes to documentation for these result types Adding unit tests for DESeqResults by Jason A. Hackney <hackney.jason@gene.com> 2014-03-03 21:44:01 +0000;
  • 83f64f5 Fixing selection of model coefficients from DESeqDataSet objects. Adding a unit test to make sure that alternate coefficients are actually selected. by Jason A. Hackney <hackney.jason@gene.com> 2014-01-23 17:26:20 +0000;
  • a186183 Fixing namespace imports for packages in Depends and Imports Fixing a deprecation warning from using select with cols instead of columns by Jason A. Hackney <hackney.jason@gene.com> 2013-11-21 19:16:21 +0000;
  • cb48cc7 Change to reprise.table.bootstrap.css changing 'table-layout: fixed;' to 'table-layout: auto;'. This allows the addition of extra columns without overly squishing the table. Version bump by Melanie Huntley <huntley.melanie@gene.com> 2013-11-06 18:29:22 +0000;
  • 2f1c798 updates to CSS and table and version bump by Josh Kaminker <kaminker.josh@gene.com> 2013-10-18 03:46:48 +0000;
  • 1a8bb63 bump version after release branch has been created by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-10-14 21:47:19 +0000;
  • 0edcb4d (origin/RELEASE_2_13, RELEASE_2_13) Creating branch for BioC 2.13 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-10-14 21:43:43 +0000;
  • e1f751a bump versions prior to creating BioC 2.13 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-10-14 21:29:21 +0000;
  • 1202071 fixed a typo by Jessica Larson <larsonj5@gene.com> 2013-10-02 00:20:06 +0000;
  • 88c4f39 updated shiny functions by Jessica Larson <larsonj5@gene.com> 2013-09-30 23:34:35 +0000;
  • c040820 documentation for custHeaderPanel by Gabriel Becker <becker.gabriel@gene.com> 2013-09-30 18:05:31 +0000;
  • cbb3cd1 *very* basic placeholder documentation for shiny-related functions by Gabriel Becker <becker.gabriel@gene.com> 2013-09-30 16:32:47 +0000;
  • 45659a8 fixed a typo by Jessica Larson <larsonj5@gene.com> 2013-09-26 16:22:47 +0000;