git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ReportingTools@80799 bc3139a8-67e5-0310-9ffc-ced21a209358
Jessica Larson authored on 26/09/2013 16:22:47
| ... | ... |
@@ -158,7 +158,7 @@ des2Report <- HTMLReport(shortName = 'RNAseq_analysis_with_DESeq2', |
| 158 | 158 |
title = 'RNA-seq analysis of differential expression using DESeq2', |
| 159 | 159 |
reportDirectory = "./reports") |
| 160 | 160 |
publish(mockRna.dse,des2Report, pvalueCutoff=0.05, |
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- annotation.db="org.Mm.eg.db", factor = mockRna.dse$conditions, |
|
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+ annotation.db="org.Mm.eg.db", factor = colData(mockRna.dse)$conditions, |
|
| 162 | 162 |
reportDir="./reports") |
| 163 | 163 |
finish(des2Report) |
| 164 | 164 |
@ |