Graph ofRepViz
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  • b0fad03 (HEAD -> master, origin/master, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:54:52 +0000;
  • 9ccdc5c (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:54:52 +0000;
  • 32701b9 bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:51:03 +0000;
  • dd8d297 (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:51:03 +0000;
  • ef446a6 Correction of diverse bugs by Thomas <faux.thomas1@gmail.com> 2021-08-30 14:10:34 +0300;
  • 705bccf Fixing format issues in the DESCRIPTION file by Thomas <faux.thomas1@gmail.com> 2021-08-26 09:18:14 +0300;
  • 39c7775 version bump for bioconductor by Thomas <faux.thomas1@gmail.com> 2021-08-24 14:47:38 +0300;
  • efbf600 conflict resolving by Thomas <faux.thomas1@gmail.com> 2021-08-24 14:44:22 +0300;
  • 17a1925 Conflicts resolving by Thomas Faux <7881032+ThomasFaux@users.noreply.github.com> 2021-08-24 14:34:14 +0300;
  • fde231c merging bioconductor and github by Thomas <faux.thomas1@gmail.com> 2021-08-24 14:21:21 +0300;
  • 389a6a3 adding rmarkdown as a suggested package to solve knitr update errors by Thomas <faux.thomas1@gmail.com> 2021-08-24 13:39:42 +0300;
  • c478ff6 bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:42:56 +0000;
  • 700aac6 (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:42:56 +0000;
  • 3035195 bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:45:01 -0400;
  • 10854f8 (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:45:01 -0400;
  • 72316e9 bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 19:25:50 +0000;
  • 8decc16 (origin/RELEASE_3_11, RELEASE_3_11) bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 19:25:50 +0000;
  • 55e592a 1.0.0 added a color function for the BED tracks, corrected error in NAMESPACE by Thomas <faux.thomas1@gmail.com> 2020-04-07 11:55:43 +0300;
  • 6cc60b5 0.99.26 correction of a visual bug appearing when there is low signal by Thomas <faux.thomas1@gmail.com> 2019-11-08 19:54:15 +0200;
  • 1abc6f1 bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:43:34 -0400;
  • 576593d (origin/RELEASE_3_10) bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:11:38 -0400;
  • 06f7f30 commit to the elolab github by Thomas <faux.thomas1@gmail.com> 2019-06-12 10:23:03 +0300;
  • b3ace94 Remove a couple of unneeded imports & add 1 missing import by Hervé Pagès <hpages@fredhutch.org> 2019-06-08 12:59:50 -0700;
  • 5b46813 bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 12:16:28 -0400;
  • b7f64d4 (origin/RELEASE_3_9, RELEASE_3_9) bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 11:54:15 -0400;
  • 5a183c6 Minor NEWS format fix by lshep <lori.shepherd@roswellpark.org> 2019-04-25 10:39:50 -0400;
  • e672ec7 added an option to control the size of the text in legends and labels by Thomas <faux.thomas1@gmail.com> 2019-04-25 14:32:21 +0300;
  • b8e921b Changed the code of Arrownumber so the the N is not constently overwritten and version bump to 0.99.16 by Thomas <faux.thomas1@gmail.com> 2019-04-15 15:18:05 +0300;
  • 863104d replaced error() with stop() and simplified the character output used in those functions by Thomas <faux.thomas1@gmail.com> 2019-04-15 14:35:55 +0300;
  • 74002fa replaced the getBiomaRt function code with a switch for better error handling by Thomas <faux.thomas1@gmail.com> 2019-04-15 13:08:29 +0300;
  • 2e0e4a3 the function splitColumnByOverlap was not used at all in the code. I removed it by Thomas <faux.thomas1@gmail.com> 2019-04-15 12:57:12 +0300;
  • 49b48a1 the function geneRanges was not used at all in the code. I removed it by Thomas <faux.thomas1@gmail.com> 2019-04-15 12:51:57 +0300;
  • 675406e removed the duplicate checking of the genome input by Thomas <faux.thomas1@gmail.com> 2019-04-15 12:38:58 +0300;
  • 061c4ce reformated createDataObject code for better error catching by Thomas <faux.thomas1@gmail.com> 2019-04-15 12:35:26 +0300;
  • efe61a8 replaced the matrix creation code in the defineLayout function by a switch by Thomas <faux.thomas1@gmail.com> 2019-04-15 12:31:18 +0300;
  • 2ebe813 change in news syntax, remove the region argument from makeBAMLayout that was not used, used document() to update the exemple by Thomas <faux.thomas1@gmail.com> 2019-04-15 09:51:16 +0300;
  • bb1f5e3 version bump 0.99.15 by Thomas <faux.thomas1@gmail.com> 2019-04-10 11:28:03 +0300;
  • 4ca0428 change the class() warning by Thomas <faux.thomas1@gmail.com> 2019-04-10 11:26:19 +0300;
  • 2e51a67 adding vignettes by Thomas <faux.thomas1@gmail.com> 2019-04-10 11:23:09 +0300;
  • f2e6331 0.99.14 comments from code review by Thomas <faux.thomas1@gmail.com> 2019-04-10 11:11:21 +0300;
  • 1267e25 Changed the Description according to reviewer comments and changed the exemple to use a temporary folder by Thomas <faux.thomas1@gmail.com> 2019-04-02 15:34:05 +0300;
  • b75d3ff Added a news file, modified the Rversion to 3.5.1 temporarly deleted RepViz-manual.pdf from top level directory and added a value to the return in R/plotRegion.R by Thomas <faux.thomas1@gmail.com> 2019-04-02 14:57:28 +0300;
  • e1174d3 0.99.13 version bump by Thomas <faux.thomas1@gmail.com> 2019-03-28 10:40:05 +0200;
  • 33d2a43 0.99.12 more indent, sorry by Thomas <faux.thomas1@gmail.com> 2019-03-27 19:17:56 +0200;
  • 2dceb4b 0.99.11 more indent, last time I swear by Thomas <faux.thomas1@gmail.com> 2019-03-27 18:57:55 +0200;
  • 6f27902 0.99.10 more indent by Thomas <faux.thomas1@gmail.com> 2019-03-27 18:47:44 +0200;
  • 64ff683 0.99.9 indentation change and version bump by Thomas <faux.thomas1@gmail.com> 2019-03-27 18:11:23 +0200;
  • 54ed3dc 0.99.8 further indent by Thomas <faux.thomas1@gmail.com> 2019-03-22 23:14:31 +0200;
  • 18cb1bf 0.99.7 further indent by Thomas <faux.thomas1@gmail.com> 2019-03-22 23:00:49 +0200;
  • 25f4b2b 0.99.6 indent by Thomas <faux.thomas1@gmail.com> 2019-03-22 22:48:31 +0200;
  • aaa97a1 0.99.5 further formatting by Thomas <faux.thomas1@gmail.com> 2019-03-22 22:34:10 +0200;
  • 097ec64 0.99.4 version bump by Thomas <faux.thomas1@gmail.com> 2019-03-22 21:55:55 +0200;
  • a261958 0.99.3 Formated the code with formatR by Thomas <faux.thomas1@gmail.com> 2019-03-22 21:47:09 +0200;
  • eaf6c20 0.99.2 changed graphics, grDevices and utils to Depends by Thomas <faux.thomas1@gmail.com> 2019-03-22 20:50:31 +0200;
  • 4539f17 0.99.2 changed graphics, grDevices and utils to imports by Thomas <faux.thomas1@gmail.com> 2019-03-22 20:42:51 +0200;
  • 5f77a94 0.99.0 Implementation of the Bioconductor building comments by Thomas <faux.thomas1@gmail.com> 2019-03-22 19:13:03 +0200;
  • 5706110 bugfix after the last bugfix the arrows in the negative way were makig the genTrack plot crash by Thomas <faux.thomas1@gmail.com> 2019-03-22 15:37:51 +0200;
  • 60f0d3b 0.2.5 version bump by Thomas <faux.thomas1@gmail.com> 2019-03-22 13:57:41 +0200;
  • ca50f36 0.2.4 New build and correction of the arrow bug for when arrows don't stop at UTR when they are in the gene by Thomas <faux.thomas1@gmail.com> 2019-03-22 12:54:26 +0200;
  • 74ca05f 0.2.3 Clean the debug comments and commented old code by Thomas <faux.thomas1@gmail.com> 2019-03-22 12:25:46 +0200;
  • a792963 0.2.3 Corrected a bug that was affecting the genomic track. Making it fail when there was no UTR by Thomas <faux.thomas1@gmail.com> 2019-03-22 12:08:43 +0200;
  • 3c0fa99 0.2.2 Corrected a bug that mad the gene track stop when trying to disply X chromosom by Thomas <faux.thomas1@gmail.com> 2019-03-22 11:52:00 +0200;
  • 9508243 Changed rBamtools to Rsamtools for the coverage calculation and updated vignette by Thomas <faux.thomas1@gmail.com> 2019-03-22 09:12:59 +0200;
  • 2f27f4f few modifications before submission to Bioconductor by Thomas <faux.thomas1@gmail.com> 2019-03-19 11:09:38 +0200;
  • d533ce8 Upgrade to the version 0.1.16, and update the vignette by Thomas <faux.thomas1@gmail.com> 2019-03-14 14:32:32 +0200;
  • 18b9817 Corrected the verbose, nothing appears on verbose false anymore by Thomas <faux.thomas1@gmail.com> 2019-03-14 14:16:24 +0200;
  • 5a4aff5 The groupping is now determined from the names, only one column is necessary by Thomas <faux.thomas1@gmail.com> 2019-03-14 14:11:52 +0200;
  • b1b18d5 added Asta as a maintainer by Thomas <faux.thomas1@gmail.com> 2019-03-14 12:32:00 +0200;
  • 04b81cf file changes for clarity purpose. consensus2.bed -> consensus.bed. in BED_input.csv PC -> MACS. In BAM_input.csv remove the group number that will be created from the names by Thomas <faux.thomas1@gmail.com> 2019-03-14 12:24:40 +0200;
  • 956bf3b Changed the file reader to accept true CSV and polished the vignette by Thomas <faux.thomas1@gmail.com> 2019-03-07 10:37:33 +0200;
  • 0acc4e3 version 0.1.14 ready to be submitted by Thomas <faux.thomas1@gmail.com> 2019-03-05 16:06:20 +0200;
  • 60c8e2a corrected the example and the vignette so that they don't give a warnning related to setwd(), also changed the margins of the plots so that it fits the vignette size by Thomas <faux.thomas1@gmail.com> 2019-03-05 16:00:30 +0200;
  • b2002f2 Changed the vignette so that the setwd() doesn't give a warning during the compilation of the vignette by Thomas <faux.thomas1@gmail.com> 2019-03-05 13:13:22 +0200;
  • fddf1f1 Initial commit v0.1.13 by Thomas <faux.thomas1@gmail.com> 2019-03-05 10:55:21 +0200;