# ReactomePA: Reactome Pathway Analysis
[](http://www.repostatus.org/#active)
[](https://codecov.io/gh/GuangchuangYu/ReactomePA/)
[](https://www.bioconductor.org/packages/ReactomePA)
[](https://github.com/guangchuangyu/ReactomePA)
[](https://www.bioconductor.org/packages/devel/bioc/html/clusterProfiler.html#since)
[](https://www.bioconductor.org/packages/devel/bioc/html/ReactomePA.html#archives)
[](https://github.com/GuangchuangYu/ReactomePA/commits/master)
[](https://bioconductor.org/checkResults/devel/bioc-LATEST/ReactomePA/)
[](https://travis-ci.org/GuangchuangYu/ReactomePA)
[](https://ci.appveyor.com/project/GuangchuangYu/ReactomePA)
This package provides functions for pathway analysis based on REACTOME
pathway database. It implements enrichment analysis, gene set enrichment
analysis and several functions for visualization.
For details, please visit
<https://yulab-smu.top/biomedical-knowledge-mining-book/>.
## :writing_hand: Authors
Guangchuang YU
School of Basic Medical Sciences, Southern Medical University
<https://yulab-smu.top>
[](https://twitter.com/intent/tweet?hashtags=ReactomePA&url=http://pubs.rsc.org/en/Content/ArticleLanding/2016/MB/C5MB00663E#!divAbstract)
[](https://saythanks.io/to/GuangchuangYu)
[](https://guangchuangyu.github.io/blog_images/biobabble.jpg)
------------------------------------------------------------------------
Please cite the following article when using `ReactomePA`:
***G Yu***, QY He<sup>\*</sup>. ReactomePA: an R/Bioconductor package
for reactome pathway analysis and visualization. ***Molecular
BioSystems*** 2016, 12(2):477-479.
[](https://doi.org/10.1039/c5mb00663e)
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