Package: ReactomeGSA
Type: Package
Title: Client for the Reactome Analysis Service for comparative multi-omics gene set analysis
Version: 1.8.0
Authors@R: person("Johannes", "Griss", email = "johannes.griss@meduniwien.ac.at", role = c("aut", "cre"), comment = c(ORCID = "0000-0003-2206-9511"))
Description: The ReactomeGSA packages uses Reactome's online analysis service to perform a multi-omics
    gene set analysis. The main advantage of this package is, that the retrieved results can be 
    visualized using REACTOME's powerful webapplication.
    Since Reactome's analysis service also uses R to perfrom the actual gene set
    analysis you will get similar results when using the same packages (such as limma and edgeR) locally.
    Therefore, if you only require a gene set analysis, different packages are more suited.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: false
Imports: jsonlite, httr, progress, ggplot2, methods, gplots, RColorBrewer, dplyr, tidyr
RoxygenNote: 7.1.2
Suggests: 
    testthat,
    knitr,
    rmarkdown,
    ReactomeGSA.data,
    Biobase,
    devtools
Enhances:
    limma,
    edgeR,
    Seurat (>= 3.0),
    scater
VignetteBuilder: knitr
biocViews: GeneSetEnrichment, Proteomics, Transcriptomics, SystemsBiology, GeneExpression, Reactome
BugReports: https://github.com/reactome/ReactomeGSA/issues
URL: https://github.com/reactome/ReactomeGSA