Bioconductor Code: ReQON

Graph of ReQON

3dfdc97 (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 09:48:37 -0400;
9a90232 (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 09:48:37 -0400;
dd59945 bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:21:35 -0400;
b39e00f (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:21:35 -0400;
8f4ab3c bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:06:28 -0400;
1505281 (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:06:28 -0400;
67ef252 bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:09:35 +0000;
32776bc (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:09:35 +0000;
5db0066 Starting with BioC 3.15 + R 4.2, 32-bit Windows is no longer supported so Windows builds are single arch only (i.e. 64-bit only) by Hervé Pagès <hpages.on.github@gmail.com> 2021-12-16 12:41:12 -0800;
d9b66b1 bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:01:06 +0000;
120ea6a (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:01:06 +0000;
26dda0f bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 15:50:37 +0000;
01c27aa (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 15:50:37 +0000;
cd4c451 bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 10:43:42 -0400;
1ab211a (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 10:43:42 -0400;
00fd356 unsupported on 32-bit Windows (no more JDK for 32-bit Windows) by Hervé Pagès <hpages@fredhutch.org> 2020-09-01 12:50:07 -0700;
44edf3f bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:27:40 +0000;
358c3a9 (origin/RELEASE_3_11, RELEASE_3_11) bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:27:40 +0000;
1f53470 bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:35:59 -0400;
2d86444 (origin/RELEASE_3_10, RELEASE_3_10) bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:08:23 -0400;
d79f508 bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 12:11:08 -0400;
2689338 (origin/RELEASE_3_9, RELEASE_3_9) bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 11:53:32 -0400;
5eaa4e2 bump x.y.z versions to odd y after creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:54:30 -0400;
1a68a91 (origin/RELEASE_3_8, RELEASE_3_8) bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:41:48 -0400;
5c84946 bump x.y.z versions to odd y after creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:41:38 -0400;
57a5a21 (origin/RELEASE_3_7, RELEASE_3_7) bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:35:22 -0400;
fc22ca2 bump x.y.z versions to odd y after creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:52:13 -0400;
0cf686c (origin/RELEASE_3_6, RELEASE_3_6) bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:39:37 -0400;
11ba8b3 bump x.y.z versions to odd y after creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:50:57 +0000;
767fd76 (origin/RELEASE_3_5, RELEASE_3_5) Creating branch for BioC 3.5 release by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:45:44 +0000;
3ce6b83 bump x.y.z versions to even y prior to creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:25:24 +0000;
8634bd5 bump x.y.z versions to odd 'y' after creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:10:43 +0000;
316b080 (origin/RELEASE_3_4, RELEASE_3_4) Creating branch for BioC 3.4 release by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:00:47 +0000;
11d7c72 bump x.y.z versions to even 'y' prior to creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 18:45:06 +0000;
952818c bump version after creating 3.3 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:30:44 +0000;
02d2e57 (origin/RELEASE_3_3, RELEASE_3_3) Creating branch for BioC 3.3 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:26:31 +0000;
5899330 Bump versions prior to creation of 3.3 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:20:18 +0000;
14b49e0 Bumped version number of all packages after creation of 3.2 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:59:53 +0000;
9867e4f (origin/RELEASE_3_2, RELEASE_3_2) Creating branch for BioC 3.2 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:57:33 +0000;
a77ad4a Bumped versions of all packages prior to creating 3.2 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:36:05 +0000;
eaac060 updated email by c.cabanski <unknown> 2015-05-10 21:00:17 +0000;
fe087fb Bump versions in trunk after creation of 3.1 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-04-16 20:02:44 +0000;
5b06035 (origin/RELEASE_3_1, RELEASE_3_1) Creating branch for BioC 3.1 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-04-16 20:00:01 +0000;
c701f26 Bump versions prior to creating 3.1 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-04-16 19:42:01 +0000;
9d8766b Bumping versions after creating 3.0 release branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-10-13 21:47:41 +0000;
119819f (origin/RELEASE_3_0, RELEASE_3_0) Creating branch for BioC 3.0 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-10-13 21:46:02 +0000;
aa37b1a Bump package versions prior to creating the 3.0 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-10-13 21:38:33 +0000;
8daf4ea Second version bump after creating 2.14 release branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-04-11 21:21:21 +0000;
260180c (origin/RELEASE_2_14, RELEASE_2_14) Creating 2.14 release branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-04-11 21:17:46 +0000;
7504d94 First version bump prior to creating 2.14 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-04-11 21:07:21 +0000;
65d2bbb Modify biocViews to remove duplicate biocViews by Sonali Arora <sarora@fhcrc.org> 2014-03-05 00:05:37 +0000;
f21cf9e modify to new biocViews to DESCRIPTION file by Sonali Arora <sarora@fhcrc.org> 2014-03-04 22:12:21 +0000;
472ac24 update vignette by c.cabanski <unknown> 2013-10-29 17:17:24 +0000;
422a25c update vignette by c.cabanski <unknown> 2013-10-29 17:14:54 +0000;
b353550 bump version after release branch has been created by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-10-14 21:47:19 +0000;
a7818a3 (origin/RELEASE_2_13, RELEASE_2_13) Creating branch for BioC 2.13 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-10-14 21:43:43 +0000;
a03528b bump versions prior to creating BioC 2.13 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-10-14 21:29:21 +0000;
5f675aa Bump y in version x.y.z to odd number in devel by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-04-03 22:06:11 +0000;
639e316 (origin/RELEASE_2_12, RELEASE_2_12) Creating branch for BioC 2.12 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-04-03 21:56:22 +0000;
b8edcba bump y of x.y.z version number for BioC 2.12 release by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-04-03 21:32:27 +0000;
f941e8f fixes error when calling hist by c.cabanski <unknown> 2013-01-02 22:48:34 +0000;
06cfe8f bump package versions after creating 2.11 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2012-10-01 22:43:56 +0000;
9866447 (origin/RELEASE_2_11, RELEASE_2_11) Creating branch for BioC 2.11 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2012-10-01 22:37:11 +0000;
a9fcd7d Bump all packages before creating 2.11 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2012-10-01 22:16:24 +0000;
0a8dcee updated NEWS,vignette by c.cabanski <unknown> 2012-09-28 20:15:29 +0000;
366a66a (origin/RELEASE_2_10, RELEASE_2_10) updated NEWS with manuscript citation by c.cabanski <unknown> 2012-09-04 16:08:04 +0000;
509ef52 indicate that Mac i386 platform is not supported (get around java leopard issue) by Dan Tenenbaum <dtenenba@fhcrc.org> 2012-07-27 21:23:47 +0000;
831c644 indicate that Mac i386 platform is not supported (get around java leopard issue) by Dan Tenenbaum <dtenenba@fhcrc.org> 2012-07-27 21:23:08 +0000;
2bddaaa version 1.3.8 by c.cabanski <unknown> 2012-07-04 17:30:52 +0000;
019f989 fix vignette build error by c.cabanski <unknown> 2012-07-04 17:21:07 +0000;
09d7f8a fixed several small bugs by c.cabanski <unknown> 2012-07-02 18:47:51 +0000;
9d03d37 updated jar files by c.cabanski <unknown> 2012-07-02 18:04:40 +0000;
58428f9 updated jar files by c.cabanski <unknown> 2012-07-02 18:02:14 +0000;
bc8afbb fixed output bam bug by c.cabanski <unknown> 2012-07-02 17:57:52 +0000;
722bcab require R version >= 2.15 by c.cabanski <unknown> 2012-06-27 03:13:03 +0000;
84e2894 updated NEWS by c.cabanski <unknown> 2012-04-27 19:31:01 +0000;
a207329 minor changes to manual by c.cabanski <unknown> 2012-04-26 15:40:02 +0000;
b3ddd6a minor changes to manual by c.cabanski <unknown> 2012-04-26 15:37:09 +0000;
b9bd2e0 updated jar file by c.cabanski <unknown> 2012-04-25 17:53:43 +0000;
1c882dd updated jar file by c.cabanski <unknown> 2012-04-25 17:47:51 +0000;
0797eb5 Updated recalibration jar file and FWSEplot.R by c.cabanski <unknown> 2012-04-25 17:44:52 +0000;
e9ef736 bumped version numbers after creating 2.10 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2012-03-30 22:15:56 +0000;
3b05207 Creating branch for BioC 2.10 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2012-03-30 22:10:45 +0000;
be648c4 first version bump prior to creating 2.10 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2012-03-30 22:05:02 +0000;
ed72726 updated vignette by c.cabanski <unknown> 2012-03-07 15:50:12 +0000;
8c9d160 updates how sequencing errors are called in training set by c.cabanski <unknown> 2012-03-05 19:57:13 +0000;
6469be3 slight update to R code to run new java function by c.cabanski <unknown> 2011-12-02 19:00:21 +0000;
5595a6d slight update to R code to run new java function by c.cabanski <unknown> 2011-12-02 18:57:51 +0000;
1aa66ea slight update to R code to run new java function by c.cabanski <unknown> 2011-12-02 17:16:19 +0000;
9d7dbe1 updated java code: - keeps all original headers from input BAM - adds additional header stating scores were recalibrated with ReQON by c.cabanski <unknown> 2011-11-21 20:11:17 +0000;
e1f2e66 updated java code: - keeps all original headers from input BAM - adds additional header stating scores were recalibrated with ReQON by c.cabanski <unknown> 2011-11-21 20:09:56 +0000;
230bc12 version bump for start of 2.10 development cycle by Dan Tenenbaum <dtenenba@fhcrc.org> 2011-10-31 23:12:28 +0000;
4c26d32 (origin/RELEASE_2_9, RELEASE_2_9) Creating branch for BioC 2.9 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2011-10-31 23:05:58 +0000;
0fd8a0e bumped package version numbers prior to creating 2.9 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2011-10-31 22:59:03 +0000;
b8f2c45 Updated SystemRequirements, cited Picard by c.cabanski <unknown> 2011-10-31 15:43:59 +0000;
e55d8b9 added Java version to SystemRequirements. by c.cabanski <unknown> 2011-10-30 21:47:34 +0000;
1410a76 maintainer will downgrade java classes, adding compatibility by Dan Tenenbaum <dtenenba@fhcrc.org> 2011-10-27 16:00:27 +0000;
6945187 marked as unsupported on Mac because the correct java version is not available for Leopard. Snow Leopard (and higher) users can still use it by installing the source package. by Dan Tenenbaum <dtenenba@fhcrc.org> 2011-10-27 01:16:33 +0000;
579a9f5 Added package ReQON to svn by Nishant Gopalakrishnan <ngopalak@fhcrc.org> 2011-10-25 22:31:14 +0000;