2010-11-04 Steffen Neumann * Corrected bug that leads to wrong monoisotopic masses for molecules containing elements where the most abundant isotope is not the first one, discovered by Ralf Tautenhahn 2010-10-22 Steffen Neumann * R/elements.R: Added remaining elements to PSE, contributed by Canteri Roberto (http://m2b2.fbk.eu/en/people) 2010-05-18 Steffen Neumann * added Runit test infrastructure 2010-04-02 Steffen Neumann * added Selenium to list of elements * added Cobalt to list of elements * fixed Selenium abundances and masses 2010-02-08 Steffen Neumann * added parameter maxisotopes to getMolecule() and decompose*() 2008-09-02 ckuhl * R/elements.R: added Deuterium 2008-08-11 sneumann * R/elements.R (initializeCharges): added initializeCharges, which can be useful for getMolecule("H3O+", elements=c(initializeCHNOPS(),initializeCharges())) * R/Rdisop.R: fixed important bug which always initialised the full PSE when supplying a special elements list 2008-04-23 sneumann * R/elements.R: fixed some masses/abundances, added more elements 2008-02-15 sneumann * R/elements.R (initializePSE): Fixed Mass of Na isotope 2007-12-04 sneumann * configure.win, src/Makevars.win, src/win/*: Fix Windows build 2007-12-04 sneumann * R/Rdisop.R, man/decomposeMass.Rd: added absolute mass deviation 2007-10-29 begert * R/elements.R: Fixed O mass 2007-10-19 sneumann * NAMESPACE: Re-enabled useDynLib(libims) to fix Linux Build 2007-10-15 sneumann * configure.win, src/Makevars.win: Fix Windows build 2007-10-14 Steffen Neumann * man: fixed some manpages 2007-07-26 sneumann * removed several get*Masses in favour of getMass * polished vignette 2007-07-11 sneumann * R/elements.R, R/Rdisop.R: Formatting changes * configure.in: disabled autogen for imslib 2007-07-09 sneumann * DESCRIPTION (Version): bumped Version following BioC scheme 2007-07-03 sneumann * src/disop.cpp: Clear error Message before running 2007-06-14 sneumann * R/Rdisop.R: removed CHNOPS warning message * Windows: first Windows build 2007-06-07 sneumann * R/Rdisop.R (decomposeMass): fixed call 2007-06-05 sneumann * src/disop.cpp: Fixed stack imbalance for empty decompositions * src/disop.cpp: improved Error Handling 2007-05-25 sneumann * R/elements.R: Added na, k, cl, br, f, i, fe, mg, ca * R/Rdisop.R: moved isotope table to own file 2007-05-15 Steffen Neumann * Added addMolecule and subMolecule to do arithmetics with adducts / fragments 2007-05-04 Steffen Neumann * configure.in: Re-Added local copy of IMS as fallback 2007-04-30 Steffen Neumann * R/zzz.R: removed unnecesary library.dynam() which also caused problems on systems without libR.so * src/ims/*: moved imslib sources into src/ subfolder instead of using unchanged libims.a 2007-03-23 Steffen Neumann * src/disop.cpp: Removed decomposeMass(), this case is handled by the R code.