1. Rdisop
  2. configure.in
Browse code

removed another autoconf artefact, use individual PKG_LIBS for Rcpp and RcppClassic

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rdisop@63551 bc3139a8-67e5-0310-9ffc-ced21a209358

s.neumann authored on 06/03/2012 20:31:22
Showing 1 changed files
configure.in
History View file @ 74978bf
1 1 
deleted file mode 100644
... ... 
@@ -1,43 +0,0 @@
1 
-dnl package name, version
2 
-AC_INIT([Rdisop], 0.4)
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-
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-dnl require version 2.5+ of autoconf
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-AC_PREREQ(2.50)
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-
7 
-dnl the CC and CFLAGS variables control configure tests, and they need to
8 
-dnl be the same as what will be used when the package is built. There is
9 
-dnl no need to place these flags in Makevars, and if no configure tests are
10 
-dnl done they are not needed here (see "Writing R Extensions" manual).
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-: ${R_HOME=`R RHOME`}
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-if test -z "${R_HOME}"; then
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-    echo "Could not determine R home directory"
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-    exit 1
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-fi
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-CXX=`"${R_HOME}/bin/R" CMD config CXX`
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-CXXFLAGS=`"${R_HOME}/bin/R" CMD config CXXFLAGS`
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-
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-AC_LANG(C++) dnl using C++
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-
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-AC_REQUIRE_CPP
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-
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-dnl configure IMS include/load flags and copy sample source to inst/doc
24 
-dnl if IMS not found via PKG, use included static Version
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-
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-#echo "Configuring libims.a in imslib..."
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-#cd src/imslib
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-#./configure --enable-shared --disable-static
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-#./configure --enable-static --disable-shared
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-#make src/libims.la
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-#cd ../../
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-IMS_CFLAGS=-I./imslib/src/
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-
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-RCPPCLASSIC_LDFLAGS=`${R_HOME}/bin/Rscript -e "Rcpp:::LdFlags()"`
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-RCPPCLASSIC_LDFLAGS+=" "
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-RCPPCLASSIC_LDFLAGS=`${R_HOME}/bin/Rscript -e "RcppClassic:::LdFlags()"`
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-
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-AC_SUBST([CPPFLAGS], ["${CPPFLAGS} $IMS_CFLAGS"])
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-AC_SUBST([LDFLAGS], ["${LDFLAGS} ${RCPPCLASSIC_LDFLAGS}"])
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-
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-AC_SUBST(WANT_MSI_TRUE)
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-AC_SUBST(CPPFLAGS)
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-AC_SUBST(LDFLAGS)
Browse code

Moved from the ancient embedded Rcpp to RcppClassic thanks to the work of Dirk Eddelbuettel who did the porting

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rdisop@63004 bc3139a8-67e5-0310-9ffc-ced21a209358

s.neumann authored on 23/02/2012 08:01:30
Showing 1 changed files
configure.in
History View file @ 8110555
... ... 
@@ -23,30 +23,21 @@ AC_REQUIRE_CPP
23 23 
 dnl configure IMS include/load flags and copy sample source to inst/doc
24 24 
 dnl if IMS not found via PKG, use included static Version
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-echo "Configuring libims.a in imslib..."
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-cd src/imslib
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-./configure --enable-shared --disable-static
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-make src/libims.la
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-cd ../../
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+#echo "Configuring libims.a in imslib..."
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+#cd src/imslib
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+#./configure --enable-shared --disable-static
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+#./configure --enable-static --disable-shared
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+#make src/libims.la
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+#cd ../../
31 32 
 IMS_CFLAGS=-I./imslib/src/
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-AC_SUBST([CPPFLAGS], ["${CPPFLAGS} -I../RcppSrc $IMS_CFLAGS"])
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-AC_SUBST([LDFLAGS], ["${LDFLAGS} -L../RcppSrc -lRcpp"])
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-AC_SUBST([LIBS], ["${LIBS} -lRcpp"])
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+RCPPCLASSIC_LDFLAGS=`${R_HOME}/bin/Rscript -e "Rcpp:::LdFlags()"`
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+RCPPCLASSIC_LDFLAGS+=" "
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+RCPPCLASSIC_LDFLAGS=`${R_HOME}/bin/Rscript -e "RcppClassic:::LdFlags()"`
36 37
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-echo "Building libRcpp.a in RcppSrc..."
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-cd RcppSrc
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-make RHOME=${R_HOME}
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-cd ..
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-
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-if test \! -d inst
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-then
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-    mkdir inst
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-fi
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-cp RcppSrc/Rcpp-license.txt inst
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+AC_SUBST([CPPFLAGS], ["${CPPFLAGS} $IMS_CFLAGS"])
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+AC_SUBST([LDFLAGS], ["${LDFLAGS} ${RCPPCLASSIC_LDFLAGS}"])
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 AC_SUBST(WANT_MSI_TRUE)
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 AC_SUBST(CPPFLAGS)
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 AC_SUBST(LDFLAGS)
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-AC_SUBST(LIBS)
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-AC_OUTPUT(src/Makevars)
Browse code

switched to static linking on 64bit linux

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rdisop@49289 bc3139a8-67e5-0310-9ffc-ced21a209358

s.neumann authored on 08/09/2010 09:27:14
Showing 1 changed files
configure.in
History View file @ e9987a7
... ... 
@@ -1,5 +1,8 @@
1 
-AC_INIT([Rdisop], 0.4) dnl package name, version
2 
-AC_PREREQ(2.50) dnl require version 2.5+ of autoconf
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+dnl package name, version
2 
+AC_INIT([Rdisop], 0.4)
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+
4 
+dnl require version 2.5+ of autoconf
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+AC_PREREQ(2.50)
3 6
4 7 
 dnl the CC and CFLAGS variables control configure tests, and they need to
5 8 
 dnl be the same as what will be used when the package is built. There is
... ... 
@@ -18,33 +21,24 @@ AC_LANG(C++) dnl using C++
18 21 
 AC_REQUIRE_CPP
19 22
20 23 
 dnl configure IMS include/load flags and copy sample source to inst/doc
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-PKG_CHECK_MODULES(IMS, [libims >= 0.5.0], [echo OK], [
22 24 
 dnl if IMS not found via PKG, use included static Version
23 25
24 
-#echo "Building libims.a in imslib..."
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-( cd src/imslib ; ./configure )
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-#./autogen.sh
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-#make ./src/libims.la
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-#cd ..
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-
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+echo "Configuring libims.a in imslib..."
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+cd src/imslib
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+./configure --enable-shared --disable-static
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+make src/libims.la
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+cd ../../
30 31 
 IMS_CFLAGS=-I./imslib/src/
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-IMS_LIBS="-L./imslib/src/.libs/ -lims"
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-])
33 32
34 33 
 AC_SUBST([CPPFLAGS], ["${CPPFLAGS} -I../RcppSrc $IMS_CFLAGS"])
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-AC_SUBST([LDFLAGS], ["${LDFLAGS} -L../RcppSrc -lRcpp $IMS_LIBS"])
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-AC_SUBST([LIBS], ["${LIBS} -lRcpp $IMS_LIBS"])
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-AC_SUBST([WANT_IMS_TRUE], ["libims"])
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-
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+AC_SUBST([LDFLAGS], ["${LDFLAGS} -L../RcppSrc -lRcpp"])
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+AC_SUBST([LIBS], ["${LIBS} -lRcpp"])
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40 37 
 echo "Building libRcpp.a in RcppSrc..."
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 cd RcppSrc
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 make RHOME=${R_HOME}
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 cd ..
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-echo "Debugging Library stuff"
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-find ${DPKG}/libs/
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-
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 if test \! -d inst
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 then
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     mkdir inst
Browse code

Continued Mac build debugging

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rdisop@29744 bc3139a8-67e5-0310-9ffc-ced21a209358

s.neumann authored on 30/01/2008 15:02:19
Showing 1 changed files
configure.in
History View file @ 75939f5
... ... 
@@ -37,13 +37,13 @@ AC_SUBST([LIBS], ["${LIBS} -lRcpp $IMS_LIBS"])
37 37 
 AC_SUBST([WANT_IMS_TRUE], ["libims"])
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-#echo "Building libRcpp.a in RcppSrc..."
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+echo "Building libRcpp.a in RcppSrc..."
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 cd RcppSrc
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 make RHOME=${R_HOME}
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 cd ..
44 44
45 45 
 echo "Debugging Library stuff"
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-ls -l ${DPKG}/libs/
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+find ${DPKG}/libs/
47 47
48 48 
 if test \! -d inst
49 49 
 then
Browse code

Debugging Mac Build

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rdisop@29713 bc3139a8-67e5-0310-9ffc-ced21a209358

s.neumann authored on 28/01/2008 09:19:18
Showing 1 changed files
configure.in
History View file @ e692ad0
... ... 
@@ -42,7 +42,8 @@ cd RcppSrc
42 42 
 make RHOME=${R_HOME}
43 43 
 cd ..
44 44
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-
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+echo "Debugging Library stuff"
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+ls -l ${DPKG}/libs/
46 47
47 48 
 if test \! -d inst
48 49 
 then
Browse code

added the Rdisop package (2nd try)

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rdisop@27972 bc3139a8-67e5-0310-9ffc-ced21a209358

hpages@fhcrc.org authored on 12/10/2007 19:36:30
Showing 1 changed files
configure.in
History View file @ 21130c8
1 1 
new file mode 100644
... ... 
@@ -0,0 +1,57 @@
1 
+AC_INIT([Rdisop], 0.4) dnl package name, version
2 
+AC_PREREQ(2.50) dnl require version 2.5+ of autoconf
3 
+
4 
+dnl the CC and CFLAGS variables control configure tests, and they need to
5 
+dnl be the same as what will be used when the package is built. There is
6 
+dnl no need to place these flags in Makevars, and if no configure tests are
7 
+dnl done they are not needed here (see "Writing R Extensions" manual).
8 
+: ${R_HOME=`R RHOME`}
9 
+if test -z "${R_HOME}"; then
10 
+    echo "Could not determine R home directory"
11 
+    exit 1
12 
+fi
13 
+CXX=`"${R_HOME}/bin/R" CMD config CXX`
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+CXXFLAGS=`"${R_HOME}/bin/R" CMD config CXXFLAGS`
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+
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+AC_LANG(C++) dnl using C++
17 
+
18 
+AC_REQUIRE_CPP
19 
+
20 
+dnl configure IMS include/load flags and copy sample source to inst/doc
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+PKG_CHECK_MODULES(IMS, [libims >= 0.5.0], [echo OK], [
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+dnl if IMS not found via PKG, use included static Version
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+
24 
+#echo "Building libims.a in imslib..."
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+( cd src/imslib ; ./configure )
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+#./autogen.sh
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+#make ./src/libims.la
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+#cd ..
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+
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+IMS_CFLAGS=-I./imslib/src/
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+IMS_LIBS="-L./imslib/src/.libs/ -lims"
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+])
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+
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+AC_SUBST([CPPFLAGS], ["${CPPFLAGS} -I../RcppSrc $IMS_CFLAGS"])
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+AC_SUBST([LDFLAGS], ["${LDFLAGS} -L../RcppSrc -lRcpp $IMS_LIBS"])
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+AC_SUBST([LIBS], ["${LIBS} -lRcpp $IMS_LIBS"])
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+AC_SUBST([WANT_IMS_TRUE], ["libims"])
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+
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+
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+#echo "Building libRcpp.a in RcppSrc..."
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+cd RcppSrc
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+make RHOME=${R_HOME}
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+cd ..
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+
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+
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+
47 
+if test \! -d inst
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+then
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+    mkdir inst
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+fi
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+cp RcppSrc/Rcpp-license.txt inst
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+
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+AC_SUBST(WANT_MSI_TRUE)
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+AC_SUBST(CPPFLAGS)
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+AC_SUBST(LDFLAGS)
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+AC_SUBST(LIBS)
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+AC_OUTPUT(src/Makevars)