# TODO: Naming - `*Assay()` return matrix-like representations of data rowRanges(): concatenated GRanges from each sample nrow(): length(rowRanges()) sparseAssay(re) -- nrow(re) x ncol(re) (assay(); cannonical representation) compactAssay(re) -- length(unique(rowRanges(re))) x ncol(re) - ranges unique within a sample disjoinAssay(re, simplify) -- length(disjoint(rowRanges(re))) x ncol(re) - any ranges qreduceAssay(re, query, simplify) - `*SummarizedExperiment()` return *SummarizedExperiment objects sparseSummarizedExperiment(re) compactSummarizedExperiment(re) disjointSummarizedExperiment(re, simplify) qreducedSummarizedExperiment(re, query, simplify)