1. RSeqAn
  2. DESCRIPTION
Browse code

bump x.y.z version to odd y following creation of RELEASE_3_17 branch

J Wokaty authored on 25/04/2023 15:01:09
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DESCRIPTION
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1 1 
 Package: RSeqAn
2 2 
 Type: Package
3 3 
 Title: R SeqAn
4 
-Version: 1.20.0
4 
+Version: 1.21.0
5 5 
 Authors@R: person("August", "Guang", role=c("aut","cre"), email = "august.guang@gmail.com")
6 6 
 Description: Headers and some wrapper functions from the SeqAn C++ library for ease of usage in R.
7 7 
 License: BSD_3_clause + file LICENSE
Browse code

bump x.y.z version to even y prior to creation of RELEASE_3_17 branch

J Wokaty authored on 25/04/2023 15:01:09
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DESCRIPTION
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1 1 
 Package: RSeqAn
2 2 
 Type: Package
3 3 
 Title: R SeqAn
4 
-Version: 1.19.0
4 
+Version: 1.20.0
5 5 
 Authors@R: person("August", "Guang", role=c("aut","cre"), email = "august.guang@gmail.com")
6 6 
 Description: Headers and some wrapper functions from the SeqAn C++ library for ease of usage in R.
7 7 
 License: BSD_3_clause + file LICENSE
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bump x.y.z version to odd y following creation of RELEASE_3_16 branch

J Wokaty authored on 01/11/2022 15:17:37
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DESCRIPTION
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1 1 
 Package: RSeqAn
2 2 
 Type: Package
3 3 
 Title: R SeqAn
4 
-Version: 1.18.0
4 
+Version: 1.19.0
5 5 
 Authors@R: person("August", "Guang", role=c("aut","cre"), email = "august.guang@gmail.com")
6 6 
 Description: Headers and some wrapper functions from the SeqAn C++ library for ease of usage in R.
7 7 
 License: BSD_3_clause + file LICENSE
Browse code

bump x.y.z version to even y prior to creation of RELEASE_3_16 branch

J Wokaty authored on 01/11/2022 15:17:37
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DESCRIPTION
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1 1 
 Package: RSeqAn
2 2 
 Type: Package
3 3 
 Title: R SeqAn
4 
-Version: 1.17.0
4 
+Version: 1.18.0
5 5 
 Authors@R: person("August", "Guang", role=c("aut","cre"), email = "august.guang@gmail.com")
6 6 
 Description: Headers and some wrapper functions from the SeqAn C++ library for ease of usage in R.
7 7 
 License: BSD_3_clause + file LICENSE
Browse code

bump x.y.z version to odd y following creation of RELEASE_3_15 branch

Nitesh Turaga authored on 26/04/2022 15:48:41
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DESCRIPTION
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1 1 
 Package: RSeqAn
2 2 
 Type: Package
3 3 
 Title: R SeqAn
4 
-Version: 1.16.0
4 
+Version: 1.17.0
5 5 
 Authors@R: person("August", "Guang", role=c("aut","cre"), email = "august.guang@gmail.com")
6 6 
 Description: Headers and some wrapper functions from the SeqAn C++ library for ease of usage in R.
7 7 
 License: BSD_3_clause + file LICENSE
Browse code

bump x.y.z version to even y prior to creation of RELEASE_3_15 branch

Nitesh Turaga authored on 26/04/2022 15:48:41
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DESCRIPTION
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@@ -1,7 +1,7 @@
1 1 
 Package: RSeqAn
2 2 
 Type: Package
3 3 
 Title: R SeqAn
4 
-Version: 1.15.0
4 
+Version: 1.16.0
5 5 
 Authors@R: person("August", "Guang", role=c("aut","cre"), email = "august.guang@gmail.com")
6 6 
 Description: Headers and some wrapper functions from the SeqAn C++ library for ease of usage in R.
7 7 
 License: BSD_3_clause + file LICENSE
Browse code

bump x.y.z version to odd y following creation of RELEASE_3_14 branch

Nitesh Turaga authored on 26/10/2021 16:44:00
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DESCRIPTION
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@@ -1,7 +1,7 @@
1 1 
 Package: RSeqAn
2 2 
 Type: Package
3 3 
 Title: R SeqAn
4 
-Version: 1.14.0
4 
+Version: 1.15.0
5 5 
 Authors@R: person("August", "Guang", role=c("aut","cre"), email = "august.guang@gmail.com")
6 6 
 Description: Headers and some wrapper functions from the SeqAn C++ library for ease of usage in R.
7 7 
 License: BSD_3_clause + file LICENSE
Browse code

bump x.y.z version to even y prior to creation of RELEASE_3_14 branch

Nitesh Turaga authored on 26/10/2021 16:44:00
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DESCRIPTION
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@@ -1,7 +1,7 @@
1 1 
 Package: RSeqAn
2 2 
 Type: Package
3 3 
 Title: R SeqAn
4 
-Version: 1.13.0
4 
+Version: 1.14.0
5 5 
 Authors@R: person("August", "Guang", role=c("aut","cre"), email = "august.guang@gmail.com")
6 6 
 Description: Headers and some wrapper functions from the SeqAn C++ library for ease of usage in R.
7 7 
 License: BSD_3_clause + file LICENSE
Browse code

bump x.y.z version to odd y following creation of RELEASE_3_13 branch

Nitesh Turaga authored on 19/05/2021 16:35:06
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DESCRIPTION
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@@ -1,7 +1,7 @@
1 1 
 Package: RSeqAn
2 2 
 Type: Package
3 3 
 Title: R SeqAn
4 
-Version: 1.12.0
4 
+Version: 1.13.0
5 5 
 Authors@R: person("August", "Guang", role=c("aut","cre"), email = "august.guang@gmail.com")
6 6 
 Description: Headers and some wrapper functions from the SeqAn C++ library for ease of usage in R.
7 7 
 License: BSD_3_clause + file LICENSE
Browse code

bump x.y.z version to even y prior to creation of RELEASE_3_13 branch

Nitesh Turaga authored on 19/05/2021 16:35:06
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DESCRIPTION
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@@ -1,7 +1,7 @@
1 1 
 Package: RSeqAn
2 2 
 Type: Package
3 3 
 Title: R SeqAn
4 
-Version: 1.11.0
4 
+Version: 1.12.0
5 5 
 Authors@R: person("August", "Guang", role=c("aut","cre"), email = "august.guang@gmail.com")
6 6 
 Description: Headers and some wrapper functions from the SeqAn C++ library for ease of usage in R.
7 7 
 License: BSD_3_clause + file LICENSE
Browse code

bump x.y.z version to odd y following creation of RELEASE_3_12 branch

Nitesh Turaga authored on 27/10/2020 15:34:38
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DESCRIPTION
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@@ -1,7 +1,7 @@
1 1 
 Package: RSeqAn
2 2 
 Type: Package
3 3 
 Title: R SeqAn
4 
-Version: 1.10.0
4 
+Version: 1.11.0
5 5 
 Authors@R: person("August", "Guang", role=c("aut","cre"), email = "august.guang@gmail.com")
6 6 
 Description: Headers and some wrapper functions from the SeqAn C++ library for ease of usage in R.
7 7 
 License: BSD_3_clause + file LICENSE
Browse code

bump x.y.z version to even y prior to creation of RELEASE_3_12 branch

Nitesh Turaga authored on 27/10/2020 15:34:38
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DESCRIPTION
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@@ -1,7 +1,7 @@
1 1 
 Package: RSeqAn
2 2 
 Type: Package
3 3 
 Title: R SeqAn
4 
-Version: 1.9.0
4 
+Version: 1.10.0
5 5 
 Authors@R: person("August", "Guang", role=c("aut","cre"), email = "august.guang@gmail.com")
6 6 
 Description: Headers and some wrapper functions from the SeqAn C++ library for ease of usage in R.
7 7 
 License: BSD_3_clause + file LICENSE
Browse code

bump x.y.z version to odd y following creation of RELEASE_3_11 branch

Nitesh Turaga authored on 27/04/2020 19:15:54
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DESCRIPTION
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@@ -1,7 +1,7 @@
1 1 
 Package: RSeqAn
2 2 
 Type: Package
3 3 
 Title: R SeqAn
4 
-Version: 1.8.0
4 
+Version: 1.9.0
5 5 
 Authors@R: person("August", "Guang", role=c("aut","cre"), email = "august.guang@gmail.com")
6 6 
 Description: Headers and some wrapper functions from the SeqAn C++ library for ease of usage in R.
7 7 
 License: BSD_3_clause + file LICENSE
Browse code

bump x.y.z version to even y prior to creation of RELEASE_3_11 branch

Nitesh Turaga authored on 27/04/2020 19:15:54
Showing 1 changed files
DESCRIPTION
History View file @ 0d6617d
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@@ -1,7 +1,7 @@
1 1 
 Package: RSeqAn
2 2 
 Type: Package
3 3 
 Title: R SeqAn
4 
-Version: 1.7.0
4 
+Version: 1.8.0
5 5 
 Authors@R: person("August", "Guang", role=c("aut","cre"), email = "august.guang@gmail.com")
6 6 
 Description: Headers and some wrapper functions from the SeqAn C++ library for ease of usage in R.
7 7 
 License: BSD_3_clause + file LICENSE
Browse code

bump x.y.z version to odd y after creation of RELEASE_3_10 branch

Nitesh Turaga authored on 29/10/2019 17:43:04
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DESCRIPTION
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@@ -1,7 +1,7 @@
1 1 
 Package: RSeqAn
2 2 
 Type: Package
3 3 
 Title: R SeqAn
4 
-Version: 1.6.0
4 
+Version: 1.7.0
5 5 
 Authors@R: person("August", "Guang", role=c("aut","cre"), email = "august.guang@gmail.com")
6 6 
 Description: Headers and some wrapper functions from the SeqAn C++ library for ease of usage in R.
7 7 
 License: BSD_3_clause + file LICENSE
Browse code

bump x.y.z version to even y prior to creation of RELEASE_3_10 branch

Nitesh Turaga authored on 29/10/2019 17:11:08
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DESCRIPTION
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@@ -1,7 +1,7 @@
1 1 
 Package: RSeqAn
2 2 
 Type: Package
3 3 
 Title: R SeqAn
4 
-Version: 1.5.0
4 
+Version: 1.6.0
5 5 
 Authors@R: person("August", "Guang", role=c("aut","cre"), email = "august.guang@gmail.com")
6 6 
 Description: Headers and some wrapper functions from the SeqAn C++ library for ease of usage in R.
7 7 
 License: BSD_3_clause + file LICENSE
Browse code

bump x.y.z versions to odd y after creation of RELEASE_3_9 branch

Nitesh Turaga authored on 02/05/2019 16:15:47
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DESCRIPTION
History View file @ abf1e74
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@@ -1,7 +1,7 @@
1 1 
 Package: RSeqAn
2 2 
 Type: Package
3 3 
 Title: R SeqAn
4 
-Version: 1.4.0
4 
+Version: 1.5.0
5 5 
 Authors@R: person("August", "Guang", role=c("aut","cre"), email = "august.guang@gmail.com")
6 6 
 Description: Headers and some wrapper functions from the SeqAn C++ library for ease of usage in R.
7 7 
 License: BSD_3_clause + file LICENSE
Browse code

bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch

Nitesh Turaga authored on 02/05/2019 15:54:11
Showing 1 changed files
DESCRIPTION
History View file @ 2c6010b
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@@ -1,7 +1,7 @@
1 1 
 Package: RSeqAn
2 2 
 Type: Package
3 3 
 Title: R SeqAn
4 
-Version: 1.3.2
4 
+Version: 1.4.0
5 5 
 Authors@R: person("August", "Guang", role=c("aut","cre"), email = "august.guang@gmail.com")
6 6 
 Description: Headers and some wrapper functions from the SeqAn C++ library for ease of usage in R.
7 7 
 License: BSD_3_clause + file LICENSE
Browse code

disabling wrappers for Windows

August Guang authored on 13/02/2019 00:20:52
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DESCRIPTION
History View file @ 7e409f4
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@@ -1,12 +1,11 @@
1 1 
 Package: RSeqAn
2 2 
 Type: Package
3 3 
 Title: R SeqAn
4 
-Version: 1.3.1
4 
+Version: 1.3.2
5 5 
 Authors@R: person("August", "Guang", role=c("aut","cre"), email = "august.guang@gmail.com")
6 6 
 Description: Headers and some wrapper functions from the SeqAn C++ library for ease of usage in R.
7 7 
 License: BSD_3_clause + file LICENSE
8 8 
 BugReports: https://github.com/compbiocore/RSeqAn/issues
9 
-SystemRequirements: C++14
10 9 
 LinkingTo: Rcpp
11 10 
 Imports: Rcpp
12 11 
 Suggests: knitr,
Browse code

updated NEWS, README, DESCRIPTION to go with bioconductor devel

August Guang authored on 29/11/2018 20:18:03
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DESCRIPTION
History View file @ f7fc9bc
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@@ -1,7 +1,7 @@
1 1 
 Package: RSeqAn
2 2 
 Type: Package
3 3 
 Title: R SeqAn
4 
-Version: 0.99.5
4 
+Version: 1.3.1
5 5 
 Authors@R: person("August", "Guang", role=c("aut","cre"), email = "august.guang@gmail.com")
6 6 
 Description: Headers and some wrapper functions from the SeqAn C++ library for ease of usage in R.
7 7 
 License: BSD_3_clause + file LICENSE
Browse code

tests for charstring

August Guang authored on 21/11/2018 19:38:07
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DESCRIPTION
History View file @ 37608b6
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@@ -10,7 +10,8 @@ SystemRequirements: C++14
10 10 
 LinkingTo: Rcpp
11 11 
 Imports: Rcpp
12 12 
 Suggests: knitr,
13 
-    rmarkdown
13 
+    rmarkdown,
14 
+    testthat
14 15 
 VignetteBuilder: knitr
15 16 
 biocViews: Infrastructure, Software
16 17 
 RoxygenNote: 6.1.0
Browse code

as/wrap for CharString

August Guang authored on 14/08/2018 01:45:17
Showing 1 changed files
DESCRIPTION
History View file @ 2446051
... ... 
@@ -3,10 +3,14 @@ Type: Package
3 3 
 Title: R SeqAn
4 4 
 Version: 0.99.5
5 5 
 Authors@R: person("August", "Guang", role=c("aut","cre"), email = "august.guang@gmail.com")
6 
-Description: Headers from the SeqAn C++ library for easy of usage in R.
6 
+Description: Headers and some wrapper functions from the SeqAn C++ library for ease of usage in R.
7 7 
 License: BSD_3_clause + file LICENSE
8 8 
 BugReports: https://github.com/compbiocore/RSeqAn/issues
9 
+SystemRequirements: C++14
10 
+LinkingTo: Rcpp
11 
+Imports: Rcpp
9 12 
 Suggests: knitr,
10 13 
     rmarkdown
11 14 
 VignetteBuilder: knitr
12 
-biocViews: Infrastructure, Software
13 15 
\ No newline at end of file
16 
+biocViews: Infrastructure, Software
17 
+RoxygenNote: 6.1.0
Browse code

NAMESPACE and vignette adjustments based on biconductor suggestsions

August Guang authored on 11/04/2018 15:25:36
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DESCRIPTION
History View file @ af0da9b
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@@ -1,7 +1,7 @@
1 1 
 Package: RSeqAn
2 2 
 Type: Package
3 3 
 Title: R SeqAn
4 
-Version: 0.99.4
4 
+Version: 0.99.5
5 5 
 Authors@R: person("August", "Guang", role=c("aut","cre"), email = "august.guang@gmail.com")
6 6 
 Description: Headers from the SeqAn C++ library for easy of usage in R.
7 7 
 License: BSD_3_clause + file LICENSE
Browse code

changed more headers

August Guang authored on 06/04/2018 18:37:16
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DESCRIPTION
History View file @ 2171225
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@@ -1,14 +1,11 @@
1 1 
 Package: RSeqAn
2 2 
 Type: Package
3 3 
 Title: R SeqAn
4 
-Version: 0.99.3
5 
-Date: 2018-02-13
6 
-Author: August Guang
7 
-Maintainer: August Guang <august.guang@gmail.com>
4 
+Version: 0.99.4
5 
+Authors@R: person("August", "Guang", role=c("aut","cre"), email = "august.guang@gmail.com")
8 6 
 Description: Headers from the SeqAn C++ library for easy of usage in R.
9 7 
 License: BSD_3_clause + file LICENSE
10 8 
 BugReports: https://github.com/compbiocore/RSeqAn/issues
11 
-RoxygenNote: 6.0.1
12 9 
 Suggests: knitr,
13 10 
     rmarkdown
14 11 
 VignetteBuilder: knitr
Browse code

fixed Vignette titles

August Guang authored on 12/03/2018 17:46:29
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DESCRIPTION
History View file @ 1d4c438
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@@ -1,7 +1,7 @@
1 1 
 Package: RSeqAn
2 2 
 Type: Package
3 3 
 Title: R SeqAn
4 
-Version: 0.99.2
4 
+Version: 0.99.3
5 5 
 Date: 2018-02-13
6 6 
 Author: August Guang
7 7 
 Maintainer: August Guang <august.guang@gmail.com>
Browse code

generating a static error log for help

August Guang authored on 05/03/2018 16:28:58
Showing 1 changed files
DESCRIPTION
History View file @ 1423a14
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@@ -1,7 +1,7 @@
1 1 
 Package: RSeqAn
2 2 
 Type: Package
3 3 
 Title: R SeqAn
4 
-Version: 0.99.1
4 
+Version: 0.99.2
5 5 
 Date: 2018-02-13
6 6 
 Author: August Guang
7 7 
 Maintainer: August Guang <august.guang@gmail.com>
Browse code

got up to getuid

August Guang authored on 05/03/2018 15:54:34
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DESCRIPTION
History View file @ 13a1fe5
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@@ -6,7 +6,7 @@ Date: 2018-02-13
6 6 
 Author: August Guang
7 7 
 Maintainer: August Guang <august.guang@gmail.com>
8 8 
 Description: Headers from the SeqAn C++ library for easy of usage in R.
9 
-License: BSD_3_clause
9 
+License: BSD_3_clause + file LICENSE
10 10 
 BugReports: https://github.com/compbiocore/RSeqAn/issues
11 11 
 RoxygenNote: 6.0.1
12 12 
 Suggests: knitr,
Browse code

more defs for mingw (but still doesn't compile)

August Guang authored on 23/02/2018 18:08:06
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DESCRIPTION
History View file @ f312140
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@@ -1,7 +1,7 @@
1 1 
 Package: RSeqAn
2 2 
 Type: Package
3 3 
 Title: R SeqAn
4 
-Version: 0.99.0
4 
+Version: 0.99.1
5 5 
 Date: 2018-02-13
6 6 
 Author: August Guang
7 7 
 Maintainer: August Guang <august.guang@gmail.com>
Browse code

defined mingw64 macros

August Guang authored on 21/02/2018 16:37:44
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DESCRIPTION
History View file @ d269c2a
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@@ -6,7 +6,7 @@ Date: 2018-02-13
6 6 
 Author: August Guang
7 7 
 Maintainer: August Guang <august.guang@gmail.com>
8 8 
 Description: Headers from the SeqAn C++ library for easy of usage in R.
9 
-License: MIT + file LICENSE
9 
+License: BSD_3_clause
10 10 
 BugReports: https://github.com/compbiocore/RSeqAn/issues
11 11 
 RoxygenNote: 6.0.1
12 12 
 Suggests: knitr,
Browse code

addressing BiocCheck NOTEs

August Guang authored on 19/02/2018 18:23:43
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DESCRIPTION
History View file @ 3724ccd
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@@ -1,14 +1,15 @@
1 1 
 Package: RSeqAn
2 2 
 Type: Package
3 3 
 Title: R SeqAn
4 
-Version: 0.1
4 
+Version: 0.99.0
5 5 
 Date: 2018-02-13
6 6 
 Author: August Guang
7 
-Maintainer: August Guang <august_guang@brown.edu>
8 
-Description: This package contains headers from the SeqAn C++ library for easy of usage in R.
7 
+Maintainer: August Guang <august.guang@gmail.com>
8 
+Description: Headers from the SeqAn C++ library for easy of usage in R.
9 9 
 License: MIT + file LICENSE
10 10 
 BugReports: https://github.com/compbiocore/RSeqAn/issues
11 11 
 RoxygenNote: 6.0.1
12 12 
 Suggests: knitr,
13 13 
     rmarkdown
14 14 
 VignetteBuilder: knitr
15 
+biocViews: Infrastructure, Software
15 16 
\ No newline at end of file
Browse code

added vignettes, updated license

August Guang authored on 19/02/2018 16:00:55
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DESCRIPTION
History View file @ b566d80
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@@ -5,7 +5,10 @@ Version: 0.1
5 5 
 Date: 2018-02-13
6 6 
 Author: August Guang
7 7 
 Maintainer: August Guang <august_guang@brown.edu>
8 
-Description: This package contains headers from the SeqAn C++ library for easy of usage in R. The probably usage will be with Rcpp.
9 
-License: BSD
8 
+Description: This package contains headers from the SeqAn C++ library for easy of usage in R.
9 
+License: MIT + file LICENSE
10 10 
 BugReports: https://github.com/compbiocore/RSeqAn/issues
11 
-RoxygenNote: 6.0.1
12 11 
\ No newline at end of file
12 
+RoxygenNote: 6.0.1
13 
+Suggests: knitr,
14 
+    rmarkdown
15 
+VignetteBuilder: knitr
Browse code

updated license, README

aguang authored on 16/02/2018 15:15:15
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DESCRIPTION
History View file @ b98a784
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@@ -6,6 +6,6 @@ Date: 2018-02-13
6 6 
 Author: August Guang
7 7 
 Maintainer: August Guang <august_guang@brown.edu>
8 8 
 Description: This package contains headers from the SeqAn C++ library for easy of usage in R. The probably usage will be with Rcpp.
9 
-License: BSL-1.0
9 
+License: BSD
10 10 
 BugReports: https://github.com/compbiocore/RSeqAn/issues
11 11 
 RoxygenNote: 6.0.1
12 12 
\ No newline at end of file
Browse code

took care of warnings and notes

aguang authored on 15/02/2018 18:39:13
Showing 1 changed files
DESCRIPTION
History View file @ 133eda0
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@@ -5,7 +5,7 @@ Version: 0.1
5 5 
 Date: 2018-02-13
6 6 
 Author: August Guang
7 7 
 Maintainer: August Guang <august_guang@brown.edu>
8 
-Description: SeqAn for R
8 
+Description: This package contains headers from the SeqAn C++ library for easy of usage in R. The probably usage will be with Rcpp.
9 9 
 License: BSL-1.0
10 10 
 BugReports: https://github.com/compbiocore/RSeqAn/issues
11 11 
 RoxygenNote: 6.0.1
12 12 
\ No newline at end of file
Browse code

modified DESCRIPTION and NAMESPACE

aguang authored on 15/02/2018 18:05:30
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DESCRIPTION
History View file @ f9d2914
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@@ -7,6 +7,5 @@ Author: August Guang
7 7 
 Maintainer: August Guang <august_guang@brown.edu>
8 8 
 Description: SeqAn for R
9 9 
 License: BSL-1.0
10 
-LinkingTo: Rcpp, BH
11 10 
 BugReports: https://github.com/compbiocore/RSeqAn/issues
12 11 
 RoxygenNote: 6.0.1
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\ No newline at end of file
Browse code

seqan header files

aguang authored on 15/02/2018 18:04:57
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DESCRIPTION
History View file @ d92ab6f
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@@ -7,4 +7,6 @@ Author: August Guang
7 7 
 Maintainer: August Guang <august_guang@brown.edu>
8 8 
 Description: SeqAn for R
9 9 
 License: BSL-1.0
10 
-BugReports: https://github.com/aguang/RSeqAn/issues
11 10 
\ No newline at end of file
11 
+LinkingTo: Rcpp, BH
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+BugReports: https://github.com/compbiocore/RSeqAn/issues
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+RoxygenNote: 6.0.1
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Browse code

DESCRIPTION

aguang authored on 13/02/2018 19:00:19
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DESCRIPTION
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+Package: RSeqAn
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+Type: Package
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+Title: R SeqAn
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+Version: 0.1
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+Date: 2018-02-13
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+Author: August Guang
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+Maintainer: August Guang <august_guang@brown.edu>
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+Description: SeqAn for R
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+License: BSL-1.0
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+BugReports: https://github.com/aguang/RSeqAn/issues
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