// ========================================================================== // SeqAn - The Library for Sequence Analysis // ========================================================================== // Copyright (c) 2006-2018, Knut Reinert, FU Berlin // All rights reserved. // // Redistribution and use in source and binary forms, with or without // modification, are permitted provided that the following conditions are met: // // * Redistributions of source code must retain the above copyright // notice, this list of conditions and the following disclaimer. // * Redistributions in binary form must reproduce the above copyright // notice, this list of conditions and the following disclaimer in the // documentation and/or other materials provided with the distribution. // * Neither the name of Knut Reinert or the FU Berlin nor the names of // its contributors may be used to endorse or promote products derived // from this software without specific prior written permission. // // THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" // AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE // IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE // ARE DISCLAIMED. IN NO EVENT SHALL KNUT REINERT OR THE FU BERLIN BE LIABLE // FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL // DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR // SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER // CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT // LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY // OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH // DAMAGE. // // ========================================================================== // Author: Andreas Gogol-Doering <andreas.doering@mdc-berlin.de> // Author: Manuel Holtgrewe <manuel.holtgrewe@fu-berlin.de> // ========================================================================== #ifndef SEQAN_INCLUDE_SEQAN_ALIGN_GAPPED_VALUE_TYPE_H_ #define SEQAN_INCLUDE_SEQAN_ALIGN_GAPPED_VALUE_TYPE_H_ namespace seqan { // ============================================================================ // Forwards // ============================================================================ // ============================================================================ // Tags, Classes, Enums // ============================================================================ // ============================================================================ // Metafunctions // ============================================================================ /*! * @mfn GappedValueType * @headerfile <seqan/align.h> * @brief Returns a value type that contains a black value <tt>'-'</tt>. * * @signature GappedValueType<T>::Type * * @tparam T The value type that should be expanded (if needed) by '-'. * * @return Type A type that can store the values of <tt>T</tt> and the value <tt>'-'</tt>. */ // TODO(holtgrew): Would it be enough to define it for Nothing instead of having a default implementation. // We need a default implementation since we need it for Nothing. template <typename T> struct GappedValueType { typedef T Type; }; template <typename TValue, typename TSpec> struct GappedValueType<SimpleType<TValue, TSpec> > { typedef SimpleType<TValue, TSpec> THost_; typedef ModifiedAlphabet<THost_, ModExpand<'-'> > Type; }; // ============================================================================ // Functions // ============================================================================ } // namespace seqan #endif // #ifndef SEQAN_INCLUDE_SEQAN_ALIGN_GAPPED_VALUE_TYPE_H_