1. ROntoTools
  2. DESCRIPTION
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bump x.y.z version to odd y following creation of RELEASE_3_17 branch

J Wokaty authored on 25/04/2023 14:26:34
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 Package: ROntoTools
2 2 
 Type: Package
3 3 
 Title: R Onto-Tools suite
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-Version: 2.28.0
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+Version: 2.29.0
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 Author: Calin Voichita <calin@wayne.edu> and Sahar Ansari
6 6 
     <saharansari@wayne.edu> and Sorin Draghici <sorin@wayne.edu>
7 7 
 Maintainer: Calin Voichita <calin@wayne.edu>
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bump x.y.z version to even y prior to creation of RELEASE_3_17 branch

J Wokaty authored on 25/04/2023 14:26:34
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 Package: ROntoTools
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 Type: Package
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 Title: R Onto-Tools suite
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-Version: 2.27.0
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+Version: 2.28.0
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 Author: Calin Voichita <calin@wayne.edu> and Sahar Ansari
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     <saharansari@wayne.edu> and Sorin Draghici <sorin@wayne.edu>
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 Maintainer: Calin Voichita <calin@wayne.edu>
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bump x.y.z version to odd y following creation of RELEASE_3_16 branch

J Wokaty authored on 01/11/2022 15:08:04
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1 1 
 Package: ROntoTools
2 2 
 Type: Package
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 Title: R Onto-Tools suite
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-Version: 2.26.0
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+Version: 2.27.0
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 Author: Calin Voichita <calin@wayne.edu> and Sahar Ansari
6 6 
     <saharansari@wayne.edu> and Sorin Draghici <sorin@wayne.edu>
7 7 
 Maintainer: Calin Voichita <calin@wayne.edu>
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bump x.y.z version to even y prior to creation of RELEASE_3_16 branch

J Wokaty authored on 01/11/2022 15:08:04
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1 1 
 Package: ROntoTools
2 2 
 Type: Package
3 3 
 Title: R Onto-Tools suite
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-Version: 2.25.0
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+Version: 2.26.0
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 Author: Calin Voichita <calin@wayne.edu> and Sahar Ansari
6 6 
     <saharansari@wayne.edu> and Sorin Draghici <sorin@wayne.edu>
7 7 
 Maintainer: Calin Voichita <calin@wayne.edu>
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bump x.y.z version to odd y following creation of RELEASE_3_15 branch

Nitesh Turaga authored on 26/04/2022 15:14:12
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1 1 
 Package: ROntoTools
2 2 
 Type: Package
3 3 
 Title: R Onto-Tools suite
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-Version: 2.24.0
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+Version: 2.25.0
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 Author: Calin Voichita <calin@wayne.edu> and Sahar Ansari
6 6 
     <saharansari@wayne.edu> and Sorin Draghici <sorin@wayne.edu>
7 7 
 Maintainer: Calin Voichita <calin@wayne.edu>
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bump x.y.z version to even y prior to creation of RELEASE_3_15 branch

Nitesh Turaga authored on 26/04/2022 15:14:12
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1 1 
 Package: ROntoTools
2 2 
 Type: Package
3 3 
 Title: R Onto-Tools suite
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-Version: 2.23.0
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+Version: 2.24.0
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 Author: Calin Voichita <calin@wayne.edu> and Sahar Ansari
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     <saharansari@wayne.edu> and Sorin Draghici <sorin@wayne.edu>
7 7 
 Maintainer: Calin Voichita <calin@wayne.edu>
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bump x.y.z version to odd y following creation of RELEASE_3_14 branch

Nitesh Turaga authored on 26/10/2021 16:07:29
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1 1 
 Package: ROntoTools
2 2 
 Type: Package
3 3 
 Title: R Onto-Tools suite
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-Version: 2.22.0
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+Version: 2.23.0
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 Author: Calin Voichita <calin@wayne.edu> and Sahar Ansari
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     <saharansari@wayne.edu> and Sorin Draghici <sorin@wayne.edu>
7 7 
 Maintainer: Calin Voichita <calin@wayne.edu>
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bump x.y.z version to even y prior to creation of RELEASE_3_14 branch

Nitesh Turaga authored on 26/10/2021 16:07:29
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1 1 
 Package: ROntoTools
2 2 
 Type: Package
3 3 
 Title: R Onto-Tools suite
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-Version: 2.21.0
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+Version: 2.22.0
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 Author: Calin Voichita <calin@wayne.edu> and Sahar Ansari
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     <saharansari@wayne.edu> and Sorin Draghici <sorin@wayne.edu>
7 7 
 Maintainer: Calin Voichita <calin@wayne.edu>
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bump x.y.z version to odd y following creation of RELEASE_3_13 branch

Nitesh Turaga authored on 19/05/2021 15:58:19
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1 1 
 Package: ROntoTools
2 2 
 Type: Package
3 3 
 Title: R Onto-Tools suite
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-Version: 2.20.0
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+Version: 2.21.0
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 Author: Calin Voichita <calin@wayne.edu> and Sahar Ansari
6 6 
     <saharansari@wayne.edu> and Sorin Draghici <sorin@wayne.edu>
7 7 
 Maintainer: Calin Voichita <calin@wayne.edu>
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bump x.y.z version to even y prior to creation of RELEASE_3_13 branch

Nitesh Turaga authored on 19/05/2021 15:58:19
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1 1 
 Package: ROntoTools
2 2 
 Type: Package
3 3 
 Title: R Onto-Tools suite
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-Version: 2.19.0
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+Version: 2.20.0
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 Author: Calin Voichita <calin@wayne.edu> and Sahar Ansari
6 6 
     <saharansari@wayne.edu> and Sorin Draghici <sorin@wayne.edu>
7 7 
 Maintainer: Calin Voichita <calin@wayne.edu>
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bump x.y.z version to odd y following creation of RELEASE_3_12 branch

Nitesh Turaga authored on 27/10/2020 14:50:03
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1 1 
 Package: ROntoTools
2 2 
 Type: Package
3 3 
 Title: R Onto-Tools suite
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-Version: 2.18.0
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+Version: 2.19.0
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 Author: Calin Voichita <calin@wayne.edu> and Sahar Ansari
6 6 
     <saharansari@wayne.edu> and Sorin Draghici <sorin@wayne.edu>
7 7 
 Maintainer: Calin Voichita <calin@wayne.edu>
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bump x.y.z version to even y prior to creation of RELEASE_3_12 branch

Nitesh Turaga authored on 27/10/2020 14:50:03
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1 1 
 Package: ROntoTools
2 2 
 Type: Package
3 3 
 Title: R Onto-Tools suite
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-Version: 2.17.0
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+Version: 2.18.0
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 Author: Calin Voichita <calin@wayne.edu> and Sahar Ansari
6 6 
     <saharansari@wayne.edu> and Sorin Draghici <sorin@wayne.edu>
7 7 
 Maintainer: Calin Voichita <calin@wayne.edu>
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bump x.y.z version to odd y following creation of RELEASE_3_11 branch

Nitesh Turaga authored on 27/04/2020 18:33:58
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1 1 
 Package: ROntoTools
2 2 
 Type: Package
3 3 
 Title: R Onto-Tools suite
4 
-Version: 2.16.0
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+Version: 2.17.0
5 5 
 Author: Calin Voichita <calin@wayne.edu> and Sahar Ansari
6 6 
     <saharansari@wayne.edu> and Sorin Draghici <sorin@wayne.edu>
7 7 
 Maintainer: Calin Voichita <calin@wayne.edu>
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bump x.y.z version to even y prior to creation of RELEASE_3_11 branch

Nitesh Turaga authored on 27/04/2020 18:33:58
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1 1 
 Package: ROntoTools
2 2 
 Type: Package
3 3 
 Title: R Onto-Tools suite
4 
-Version: 2.15.0
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+Version: 2.16.0
5 5 
 Author: Calin Voichita <calin@wayne.edu> and Sahar Ansari
6 6 
     <saharansari@wayne.edu> and Sorin Draghici <sorin@wayne.edu>
7 7 
 Maintainer: Calin Voichita <calin@wayne.edu>
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bump x.y.z version to odd y after creation of RELEASE_3_10 branch

Nitesh Turaga authored on 29/10/2019 17:36:47
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1 1 
 Package: ROntoTools
2 2 
 Type: Package
3 3 
 Title: R Onto-Tools suite
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-Version: 2.14.0
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+Version: 2.15.0
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 Author: Calin Voichita <calin@wayne.edu> and Sahar Ansari
6 6 
     <saharansari@wayne.edu> and Sorin Draghici <sorin@wayne.edu>
7 7 
 Maintainer: Calin Voichita <calin@wayne.edu>
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bump x.y.z version to even y prior to creation of RELEASE_3_10 branch

Nitesh Turaga authored on 29/10/2019 17:08:38
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1 1 
 Package: ROntoTools
2 2 
 Type: Package
3 3 
 Title: R Onto-Tools suite
4 
-Version: 2.13.0
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+Version: 2.14.0
5 5 
 Author: Calin Voichita <calin@wayne.edu> and Sahar Ansari
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     <saharansari@wayne.edu> and Sorin Draghici <sorin@wayne.edu>
7 7 
 Maintainer: Calin Voichita <calin@wayne.edu>
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bump x.y.z versions to odd y after creation of RELEASE_3_9 branch

Nitesh Turaga authored on 02/05/2019 16:11:21
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1 1 
 Package: ROntoTools
2 2 
 Type: Package
3 3 
 Title: R Onto-Tools suite
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-Version: 2.12.0
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+Version: 2.13.0
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 Author: Calin Voichita <calin@wayne.edu> and Sahar Ansari
6 6 
     <saharansari@wayne.edu> and Sorin Draghici <sorin@wayne.edu>
7 7 
 Maintainer: Calin Voichita <calin@wayne.edu>
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bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch

Nitesh Turaga authored on 02/05/2019 15:53:42
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1 1 
 Package: ROntoTools
2 2 
 Type: Package
3 3 
 Title: R Onto-Tools suite
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-Version: 2.11.0
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+Version: 2.12.0
5 5 
 Author: Calin Voichita <calin@wayne.edu> and Sahar Ansari
6 6 
     <saharansari@wayne.edu> and Sorin Draghici <sorin@wayne.edu>
7 7 
 Maintainer: Calin Voichita <calin@wayne.edu>
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bump x.y.z versions to odd y after creation of RELEASE_3_8 branch

vobencha authored on 30/10/2018 15:54:31
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1 1 
 Package: ROntoTools
2 2 
 Type: Package
3 3 
 Title: R Onto-Tools suite
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-Version: 2.10.0
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+Version: 2.11.0
5 5 
 Author: Calin Voichita <calin@wayne.edu> and Sahar Ansari
6 6 
     <saharansari@wayne.edu> and Sorin Draghici <sorin@wayne.edu>
7 7 
 Maintainer: Calin Voichita <calin@wayne.edu>
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bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch

vobencha authored on 30/10/2018 15:41:51
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1 1 
 Package: ROntoTools
2 2 
 Type: Package
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 Title: R Onto-Tools suite
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-Version: 2.9.0
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+Version: 2.10.0
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 Author: Calin Voichita <calin@wayne.edu> and Sahar Ansari
6 6 
     <saharansari@wayne.edu> and Sorin Draghici <sorin@wayne.edu>
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 Maintainer: Calin Voichita <calin@wayne.edu>
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bump x.y.z versions to odd y after creation of RELEASE_3_7 branch

vobencha authored on 30/04/2018 14:41:39
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1 1 
 Package: ROntoTools
2 2 
 Type: Package
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 Title: R Onto-Tools suite
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-Version: 2.8.0
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+Version: 2.9.0
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 Author: Calin Voichita <calin@wayne.edu> and Sahar Ansari
6 6 
     <saharansari@wayne.edu> and Sorin Draghici <sorin@wayne.edu>
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 Maintainer: Calin Voichita <calin@wayne.edu>
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bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch

vobencha authored on 30/04/2018 14:35:29
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1 1 
 Package: ROntoTools
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 Type: Package
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 Title: R Onto-Tools suite
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-Version: 2.7.0
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+Version: 2.8.0
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 Author: Calin Voichita <calin@wayne.edu> and Sahar Ansari
6 6 
     <saharansari@wayne.edu> and Sorin Draghici <sorin@wayne.edu>
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 Maintainer: Calin Voichita <calin@wayne.edu>
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bump x.y.z versions to odd y after creation of RELEASE_3_6 branch

Hervé Pagès authored on 30/10/2017 16:52:46
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1 1 
 Package: ROntoTools
2 2 
 Type: Package
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 Title: R Onto-Tools suite
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-Version: 2.6.0
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+Version: 2.7.0
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 Author: Calin Voichita <calin@wayne.edu> and Sahar Ansari
6 6 
     <saharansari@wayne.edu> and Sorin Draghici <sorin@wayne.edu>
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 Maintainer: Calin Voichita <calin@wayne.edu>
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bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch

Hervé Pagès authored on 30/10/2017 16:40:01
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1 1 
 Package: ROntoTools
2 2 
 Type: Package
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 Title: R Onto-Tools suite
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-Version: 2.5.0
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+Version: 2.6.0
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 Author: Calin Voichita <calin@wayne.edu> and Sahar Ansari
6 6 
     <saharansari@wayne.edu> and Sorin Draghici <sorin@wayne.edu>
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 Maintainer: Calin Voichita <calin@wayne.edu>
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bump x.y.z versions to odd y after creation of 3_5 branch

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ROntoTools@129129 bc3139a8-67e5-0310-9ffc-ced21a209358

Herve Pages authored on 24/04/2017 19:50:57
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1 1 
 Package: ROntoTools
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 Type: Package
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 Title: R Onto-Tools suite
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-Version: 2.4.0
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+Version: 2.5.0
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 Author: Calin Voichita <calin@wayne.edu> and Sahar Ansari
6 6 
     <saharansari@wayne.edu> and Sorin Draghici <sorin@wayne.edu>
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 Maintainer: Calin Voichita <calin@wayne.edu>
Browse code

bump x.y.z versions to even y prior to creation of 3_5 branch

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ROntoTools@129126 bc3139a8-67e5-0310-9ffc-ced21a209358

Herve Pages authored on 24/04/2017 19:25:24
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1 1 
 Package: ROntoTools
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 Type: Package
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 Title: R Onto-Tools suite
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-Version: 2.3.0
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+Version: 2.4.0
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 Author: Calin Voichita <calin@wayne.edu> and Sahar Ansari
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     <saharansari@wayne.edu> and Sorin Draghici <sorin@wayne.edu>
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 Maintainer: Calin Voichita <calin@wayne.edu>
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bump x.y.z versions to odd 'y' after creation of 3_4 branch

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ROntoTools@122712 bc3139a8-67e5-0310-9ffc-ced21a209358

Herve Pages authored on 17/10/2016 19:10:43
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1 1 
 Package: ROntoTools
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 Type: Package
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 Title: R Onto-Tools suite
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-Version: 2.2.0
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+Version: 2.3.0
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 Author: Calin Voichita <calin@wayne.edu> and Sahar Ansari
6 6 
     <saharansari@wayne.edu> and Sorin Draghici <sorin@wayne.edu>
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 Maintainer: Calin Voichita <calin@wayne.edu>
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bump x.y.z versions to even 'y' prior to creation of 3_4 branch

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ROntoTools@122710 bc3139a8-67e5-0310-9ffc-ced21a209358

Herve Pages authored on 17/10/2016 18:45:06
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1 1 
 Package: ROntoTools
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 Type: Package
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 Title: R Onto-Tools suite
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-Version: 2.1.0
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+Version: 2.2.0
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 Author: Calin Voichita <calin@wayne.edu> and Sahar Ansari
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     <saharansari@wayne.edu> and Sorin Draghici <sorin@wayne.edu>
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 Maintainer: Calin Voichita <calin@wayne.edu>
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bump version after creating 3.3 branch

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ROntoTools@117081 bc3139a8-67e5-0310-9ffc-ced21a209358

Dan Tenenbaum authored on 03/05/2016 21:30:44
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1 1 
 Package: ROntoTools
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 Title: R Onto-Tools suite
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-Version: 2.0.0
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+Version: 2.1.0
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 Author: Calin Voichita <calin@wayne.edu> and Sahar Ansari
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     <saharansari@wayne.edu> and Sorin Draghici <sorin@wayne.edu>
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 Maintainer: Calin Voichita <calin@wayne.edu>
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Bump versions prior to creation of 3.3 branch

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ROntoTools@117079 bc3139a8-67e5-0310-9ffc-ced21a209358

Dan Tenenbaum authored on 03/05/2016 21:20:18
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1 1 
 Package: ROntoTools
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 Type: Package
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 Title: R Onto-Tools suite
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-Version: 1.99.0
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+Version: 2.0.0
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 Author: Calin Voichita <calin@wayne.edu> and Sahar Ansari
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     <saharansari@wayne.edu> and Sorin Draghici <sorin@wayne.edu>
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 Maintainer: Calin Voichita <calin@wayne.edu>
Browse code

added novel method and increase version to 1.99

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ROntoTools@116328 bc3139a8-67e5-0310-9ffc-ced21a209358

Calin Voichita authored on 15/04/2016 05:40:35
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1 1 
 Package: ROntoTools
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 Type: Package
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 Title: R Onto-Tools suite
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-Version: 1.11.0
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-Author: Calin Voichita <calin@wayne.edu> and Sorin Draghici <sorin@wayne.edu>
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+Version: 1.99.0
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+Author: Calin Voichita <calin@wayne.edu> and Sahar Ansari
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+    <saharansari@wayne.edu> and Sorin Draghici <sorin@wayne.edu>
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 Maintainer: Calin Voichita <calin@wayne.edu>
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-Description: Suite of tools for functional analysis
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+Description: Suite of tools for functional analysis.
8 9 
 biocViews: NetworkAnalysis, Microarray, GraphsAndNetworks
9 10 
 License: CC BY-NC-ND 4.0 + file LICENSE
10 11 
 Depends:
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17 18 
 Suggests:
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     RUnit,
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     BiocGenerics
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-Collate:
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-    'pathwayExpress.R'
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-    'utils.R'
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-    'graphWeights.R'
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-    'keggDataREST.R'
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-    'AllClasses.R'
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-    'AllGenerics.R'
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-    'nodeWeights-methods.R'
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-    'pePathway-utils.R'
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-    'Summary-methods.R'
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-    'plot-methods.R'
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-    'renderInfo-methods.R'
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+RoxygenNote: 5.0.1
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Bumped version number of all packages after creation of 3.2 branch.

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ROntoTools@109592 bc3139a8-67e5-0310-9ffc-ced21a209358

Dan Tenenbaum authored on 13/10/2015 19:59:53
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 Package: ROntoTools
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 Title: R Onto-Tools suite
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-Version: 1.10.0
4 
+Version: 1.11.0
5 5 
 Author: Calin Voichita <calin@wayne.edu> and Sorin Draghici <sorin@wayne.edu>
6 6 
 Maintainer: Calin Voichita <calin@wayne.edu>
7 7 
 Description: Suite of tools for functional analysis
Browse code

Bumped versions of all packages prior to creating 3.2 branch.

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ROntoTools@109589 bc3139a8-67e5-0310-9ffc-ced21a209358

Dan Tenenbaum authored on 13/10/2015 19:36:05
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1 1 
 Package: ROntoTools
2 2 
 Type: Package
3 3 
 Title: R Onto-Tools suite
4 
-Version: 1.9.1
4 
+Version: 1.10.0
5 5 
 Author: Calin Voichita <calin@wayne.edu> and Sorin Draghici <sorin@wayne.edu>
6 6 
 Maintainer: Calin Voichita <calin@wayne.edu>
7 7 
 Description: Suite of tools for functional analysis
Browse code

updated license information

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ROntoTools@107859 bc3139a8-67e5-0310-9ffc-ced21a209358

Calin Voichita authored on 28/08/2015 04:51:46
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1 1 
 Package: ROntoTools
2 2 
 Type: Package
3 3 
 Title: R Onto-Tools suite
4 
-Version: 1.9.0
4 
+Version: 1.9.1
5 5 
 Author: Calin Voichita <calin@wayne.edu> and Sorin Draghici <sorin@wayne.edu>
6 6 
 Maintainer: Calin Voichita <calin@wayne.edu>
7 7 
 Description: Suite of tools for functional analysis
8 8 
 biocViews: NetworkAnalysis, Microarray, GraphsAndNetworks
9 
-License: GPL (>= 3)
9 
+License: CC BY-NC-ND 4.0 + file LICENSE
10 10 
 Depends:
11 11 
     methods,
12 12 
     graph,
Browse code

Bump versions in trunk after creation of 3.1 branch.

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ROntoTools@102594 bc3139a8-67e5-0310-9ffc-ced21a209358

Dan Tenenbaum authored on 16/04/2015 20:02:44
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1 1 
 Package: ROntoTools
2 2 
 Type: Package
3 3 
 Title: R Onto-Tools suite
4 
-Version: 1.8.0
4 
+Version: 1.9.0
5 5 
 Author: Calin Voichita <calin@wayne.edu> and Sorin Draghici <sorin@wayne.edu>
6 6 
 Maintainer: Calin Voichita <calin@wayne.edu>
7 7 
 Description: Suite of tools for functional analysis
Browse code

Bump versions prior to creating 3.1 branch.

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ROntoTools@102591 bc3139a8-67e5-0310-9ffc-ced21a209358

Dan Tenenbaum authored on 16/04/2015 19:42:01
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@@ -1,7 +1,7 @@
1 1 
 Package: ROntoTools
2 2 
 Type: Package
3 3 
 Title: R Onto-Tools suite
4 
-Version: 1.7.1
4 
+Version: 1.8.0
5 5 
 Author: Calin Voichita <calin@wayne.edu> and Sorin Draghici <sorin@wayne.edu>
6 6 
 Maintainer: Calin Voichita <calin@wayne.edu>
7 7 
 Description: Suite of tools for functional analysis
Browse code

bugfix for downloading KEGG data ( trunk)

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ROntoTools@97968 bc3139a8-67e5-0310-9ffc-ced21a209358

Calin Voichita authored on 02/01/2015 20:47:08
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@@ -1,16 +1,31 @@
1 1 
 Package: ROntoTools
2 2 
 Type: Package
3 3 
 Title: R Onto-Tools suite
4 
-Version: 1.7.0
5 
-Author: Calin Voichita <calin@wayne.edu> and Sorin Draghici
6 
-        <sorin@wayne.edu>
4 
+Version: 1.7.1
5 
+Author: Calin Voichita <calin@wayne.edu> and Sorin Draghici <sorin@wayne.edu>
7 6 
 Maintainer: Calin Voichita <calin@wayne.edu>
8 7 
 Description: Suite of tools for functional analysis
8 
+biocViews: NetworkAnalysis, Microarray, GraphsAndNetworks
9 9 
 License: GPL (>= 3)
10 
-Depends: methods, graph, boot, KEGGREST, KEGGgraph, Rgraphviz
11 
-Suggests: RUnit, BiocGenerics
12 
-Collate: 'pathwayExpress.R' 'utils.R' 'graphWeights.R' 'keggDataREST.R'
13 
-        'AllClasses.R' 'AllGenerics.R' 'nodeWeights-methods.R'
14 
-        'pePathway-utils.R' 'Summary-methods.R' 'plot-methods.R'
15 
-        'renderInfo-methods.R'
16 
-biocViews: Network, Microarray, GraphAndNetwork
10 
+Depends:
11 
+    methods,
12 
+    graph,
13 
+    boot,
14 
+    KEGGREST,
15 
+    KEGGgraph,
16 
+    Rgraphviz
17 
+Suggests:
18 
+    RUnit,
19 
+    BiocGenerics
20 
+Collate:
21 
+    'pathwayExpress.R'
22 
+    'utils.R'
23 
+    'graphWeights.R'
24 
+    'keggDataREST.R'
25 
+    'AllClasses.R'
26 
+    'AllGenerics.R'
27 
+    'nodeWeights-methods.R'
28 
+    'pePathway-utils.R'
29 
+    'Summary-methods.R'
30 
+    'plot-methods.R'
31 
+    'renderInfo-methods.R'
Browse code

Bumping versions after creating 3.0 release branch.

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ROntoTools@95443 bc3139a8-67e5-0310-9ffc-ced21a209358

Dan Tenenbaum authored on 13/10/2014 21:47:41
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1 1 
 Package: ROntoTools
2 2 
 Type: Package
3 3 
 Title: R Onto-Tools suite
4 
-Version: 1.6.0
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+Version: 1.7.0
5 5 
 Author: Calin Voichita <calin@wayne.edu> and Sorin Draghici
6 6 
         <sorin@wayne.edu>
7 7 
 Maintainer: Calin Voichita <calin@wayne.edu>
Browse code

Bump package versions prior to creating the 3.0 branch.

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ROntoTools@95439 bc3139a8-67e5-0310-9ffc-ced21a209358

Dan Tenenbaum authored on 13/10/2014 21:38:33
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@@ -1,7 +1,7 @@
1 1 
 Package: ROntoTools
2 2 
 Type: Package
3 3 
 Title: R Onto-Tools suite
4 
-Version: 1.5.0
4 
+Version: 1.6.0
5 5 
 Author: Calin Voichita <calin@wayne.edu> and Sorin Draghici
6 6 
         <sorin@wayne.edu>
7 7 
 Maintainer: Calin Voichita <calin@wayne.edu>
Browse code

Second version bump after creating 2.14 release branch.

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ROntoTools@88840 bc3139a8-67e5-0310-9ffc-ced21a209358

Dan Tenenbaum authored on 11/04/2014 21:21:21
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1 1 
 Package: ROntoTools
2 2 
 Type: Package
3 3 
 Title: R Onto-Tools suite
4 
-Version: 1.4.0
4 
+Version: 1.5.0
5 5 
 Author: Calin Voichita <calin@wayne.edu> and Sorin Draghici
6 6 
         <sorin@wayne.edu>
7 7 
 Maintainer: Calin Voichita <calin@wayne.edu>
Browse code

First version bump prior to creating 2.14 branch.

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ROntoTools@88838 bc3139a8-67e5-0310-9ffc-ced21a209358

Dan Tenenbaum authored on 11/04/2014 21:07:21
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1 1 
 Package: ROntoTools
2 2 
 Type: Package
3 3 
 Title: R Onto-Tools suite
4 
-Version: 1.3.2
4 
+Version: 1.4.0
5 5 
 Author: Calin Voichita <calin@wayne.edu> and Sorin Draghici
6 6 
         <sorin@wayne.edu>
7 7 
 Maintainer: Calin Voichita <calin@wayne.edu>
Browse code

modify to new biocViews to DESCRIPTION file

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ROntoTools@87035 bc3139a8-67e5-0310-9ffc-ced21a209358

Sonali Arora authored on 04/03/2014 22:12:21
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@@ -1,31 +1,16 @@
1 1 
 Package: ROntoTools
2 2 
 Type: Package
3 3 
 Title: R Onto-Tools suite
4 
-Version: 1.3.1
5 
-Author: Calin Voichita <calin@wayne.edu> and Sorin Draghici <sorin@wayne.edu>
4 
+Version: 1.3.2
5 
+Author: Calin Voichita <calin@wayne.edu> and Sorin Draghici
6 
+        <sorin@wayne.edu>
6 7 
 Maintainer: Calin Voichita <calin@wayne.edu>
7 8 
 Description: Suite of tools for functional analysis
8 
-biocViews: NetworkAnalysis, Microarray, GraphsAndNetworks
9 9 
 License: GPL (>= 3)
10 
-Depends:
11 
-    methods,
12 
-    graph,
13 
-    boot,
14 
-    KEGGREST,
15 
-    KEGGgraph,
16 
-    Rgraphviz
17 
-Suggests:
18 
-    RUnit,
19 
-    BiocGenerics
20 
-Collate:
21 
-    'pathwayExpress.R'
22 
-    'utils.R'
23 
-    'graphWeights.R'
24 
-    'keggDataREST.R'
25 
-    'AllClasses.R'
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-    'AllGenerics.R'
27 
-    'nodeWeights-methods.R'
28 
-    'pePathway-utils.R'
29 
-    'Summary-methods.R'
30 
-    'plot-methods.R'
31 
-    'renderInfo-methods.R'
10 
+Depends: methods, graph, boot, KEGGREST, KEGGgraph, Rgraphviz
11 
+Suggests: RUnit, BiocGenerics
12 
+Collate: 'pathwayExpress.R' 'utils.R' 'graphWeights.R' 'keggDataREST.R'
13 
+        'AllClasses.R' 'AllGenerics.R' 'nodeWeights-methods.R'
14 
+        'pePathway-utils.R' 'Summary-methods.R' 'plot-methods.R'
15 
+        'renderInfo-methods.R'
16 
+biocViews: Network, Microarray, GraphAndNetwork
Browse code

fix for build error when the inverse algorithm does not converge

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ROntoTools@83801 bc3139a8-67e5-0310-9ffc-ced21a209358

Calin Voichita authored on 02/12/2013 15:06:43
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@@ -1,7 +1,7 @@
1 1 
 Package: ROntoTools
2 2 
 Type: Package
3 3 
 Title: R Onto-Tools suite
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-Version: 1.3.0
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+Version: 1.3.1
5 5 
 Author: Calin Voichita <calin@wayne.edu> and Sorin Draghici <sorin@wayne.edu>
6 6 
 Maintainer: Calin Voichita <calin@wayne.edu>
7 7 
 Description: Suite of tools for functional analysis
Browse code

bump version after release branch has been created

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ROntoTools@81644 bc3139a8-67e5-0310-9ffc-ced21a209358

Dan Tenenbaum authored on 14/10/2013 21:47:19
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1 1 
 Package: ROntoTools
2 2 
 Type: Package
3 3 
 Title: R Onto-Tools suite
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-Version: 1.2.0
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+Version: 1.3.0
5 5 
 Author: Calin Voichita <calin@wayne.edu> and Sorin Draghici <sorin@wayne.edu>
6 6 
 Maintainer: Calin Voichita <calin@wayne.edu>
7 7 
 Description: Suite of tools for functional analysis
Browse code

bump versions prior to creating BioC 2.13 branch

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ROntoTools@81642 bc3139a8-67e5-0310-9ffc-ced21a209358

Dan Tenenbaum authored on 14/10/2013 21:29:21
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1 1 
 Package: ROntoTools
2 2 
 Type: Package
3 3 
 Title: R Onto-Tools suite
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-Version: 1.1.2
4 
+Version: 1.2.0
5 5 
 Author: Calin Voichita <calin@wayne.edu> and Sorin Draghici <sorin@wayne.edu>
6 6 
 Maintainer: Calin Voichita <calin@wayne.edu>
7 7 
 Description: Suite of tools for functional analysis
Browse code

bug fixes and new feature to consider pathways with no interactions (i.e., gene sets)

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ROntoTools@80800 bc3139a8-67e5-0310-9ffc-ced21a209358

Calin Voichita authored on 26/09/2013 16:41:14
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1 1 
 Package: ROntoTools
2 2 
 Type: Package
3 3 
 Title: R Onto-Tools suite
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-Version: 1.1.0
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+Version: 1.1.2
5 5 
 Author: Calin Voichita <calin@wayne.edu> and Sorin Draghici <sorin@wayne.edu>
6 6 
 Maintainer: Calin Voichita <calin@wayne.edu>
7 7 
 Description: Suite of tools for functional analysis
Browse code

Bump y in version x.y.z to odd number in devel

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ROntoTools@75270 bc3139a8-67e5-0310-9ffc-ced21a209358

Dan Tenenbaum authored on 03/04/2013 22:06:11
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1 1 
 Package: ROntoTools
2 2 
 Type: Package
3 3 
 Title: R Onto-Tools suite
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-Version: 1.0.0
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+Version: 1.1.0
5 5 
 Author: Calin Voichita <calin@wayne.edu> and Sorin Draghici <sorin@wayne.edu>
6 6 
 Maintainer: Calin Voichita <calin@wayne.edu>
7 7 
 Description: Suite of tools for functional analysis
Browse code

bump y of x.y.z version number for BioC 2.12 release

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ROntoTools@75263 bc3139a8-67e5-0310-9ffc-ced21a209358

Dan Tenenbaum authored on 03/04/2013 21:32:27
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1 1 
 Package: ROntoTools
2 2 
 Type: Package
3 3 
 Title: R Onto-Tools suite
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-Version: 0.99.3
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+Version: 1.0.0
5 5 
 Author: Calin Voichita <calin@wayne.edu> and Sorin Draghici <sorin@wayne.edu>
6 6 
 Maintainer: Calin Voichita <calin@wayne.edu>
7 7 
 Description: Suite of tools for functional analysis
Browse code

added plot functionalities; updated documentation; removed 3.0.0 dependency; fixed bugs

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ROntoTools@75116 bc3139a8-67e5-0310-9ffc-ced21a209358

Calin Voichita authored on 31/03/2013 19:14:34
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@@ -1,14 +1,31 @@
1 1 
 Package: ROntoTools
2 2 
 Type: Package
3 3 
 Title: R Onto-Tools suite
4 
-Version: 0.99.2
4 
+Version: 0.99.3
5 5 
 Author: Calin Voichita <calin@wayne.edu> and Sorin Draghici <sorin@wayne.edu>
6 6 
 Maintainer: Calin Voichita <calin@wayne.edu>
7 7 
 Description: Suite of tools for functional analysis
8 8 
 biocViews: NetworkAnalysis, Microarray, GraphsAndNetworks
9 9 
 License: GPL (>= 3)
10 
-Depends: R (>= 3.0.0), methods, graph, boot, KEGGREST, KEGGgraph
11 
-Suggests: RUnit, BiocGenerics, Rgraphviz
12 
-Collate: 'pathwayExpress.R' 'utils.R' 'graphWeights.R' 'keggDataREST.R'
13 
-        'AllClasses.R' 'AllGenerics.R' 'nodeWeights-methods.R'
14 
-        'pePathway-utils.R' 'Summary-methods.R'
10 
+Depends:
11 
+    methods,
12 
+    graph,
13 
+    boot,
14 
+    KEGGREST,
15 
+    KEGGgraph,
16 
+    Rgraphviz
17 
+Suggests:
18 
+    RUnit,
19 
+    BiocGenerics
20 
+Collate:
21 
+    'pathwayExpress.R'
22 
+    'utils.R'
23 
+    'graphWeights.R'
24 
+    'keggDataREST.R'
25 
+    'AllClasses.R'
26 
+    'AllGenerics.R'
27 
+    'nodeWeights-methods.R'
28 
+    'pePathway-utils.R'
29 
+    'Summary-methods.R'
30 
+    'plot-methods.R'
31 
+    'renderInfo-methods.R'
Browse code

Add BaseSpaceR CNORfeeder eiR and ROntoTools to the repos.

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ROntoTools@74711 bc3139a8-67e5-0310-9ffc-ced21a209358

Marc Carlson authored on 22/03/2013 22:40:44
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new file mode 100644
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1 
+Package: ROntoTools
2 
+Type: Package
3 
+Title: R Onto-Tools suite
4 
+Version: 0.99.2
5 
+Author: Calin Voichita <calin@wayne.edu> and Sorin Draghici <sorin@wayne.edu>
6 
+Maintainer: Calin Voichita <calin@wayne.edu>
7 
+Description: Suite of tools for functional analysis
8 
+biocViews: NetworkAnalysis, Microarray, GraphsAndNetworks
9 
+License: GPL (>= 3)
10 
+Depends: R (>= 3.0.0), methods, graph, boot, KEGGREST, KEGGgraph
11 
+Suggests: RUnit, BiocGenerics, Rgraphviz
12 
+Collate: 'pathwayExpress.R' 'utils.R' 'graphWeights.R' 'keggDataREST.R'
13 
+        'AllClasses.R' 'AllGenerics.R' 'nodeWeights-methods.R'
14 
+        'pePathway-utils.R' 'Summary-methods.R'