% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/keggDataREST.R
\name{keggPathwayGraphs}
\alias{keggPathwayGraphs}
\usage{
keggPathwayGraphs(organism = "hsa", targRelTypes = c("GErel", "PCrel",
"PPrel"), relPercThresh = 0.9, nodeOnlyGraphs = FALSE,
updateCache = FALSE, verbose = TRUE)
}
\arguments{
\item{organism}{organism code as defined by KEGG}

\item{targRelTypes}{target relation types}

\item{relPercThresh}{percentage of the number of relation types over all possible realtions in the pathway}

\item{nodeOnlyGraphs}{allow graphs with no edges}

}
\value{
A list of \code{\link{graphNEL}} objects encoding the pathway information.
}
\description{
}
\examples{

# The pathway cache provided as part of the pathway contains only the
# the pathways using the updateCache parameter
kpg <- keggPathwayGraphs("hsa")

# to update the pathway cache for human run:
# kpg <- keggPathwayGraphs("hsa", updateCache = TRUE)
# this is time consuming and depends on the available bandwith.

kpg[["path:hsa04110"]]