@@ -1,6 +1,6 @@

 Package: RNAmodR

 Title: RNAmodR: Detection of post-transcriptional modifications

-Version: 0.99.3

+Version: 0.99.4

 Authors@R: c(person("Felix G.M.", 

                     "Ernst", 

                     email = "felix.gm.ernst@outlook.com", 

@@ -133,8 +133,10 @@ NULL

 #' data(msi,package="RNAmodR")

 #' mi <- msi[[1]]

 #' settings(mi)

+#' \dontrun{

 #' aggregate(mi)

 #' modify(mi)

+#' }

 #' getDataTrack(mi, "1", mainScore(mi))

 NULL

@@ -811,7 +811,6 @@ setMethod("Modifier",

 #' # the Modifier or ModifierSet object

 #' sdfl <- aggregate(e5sd)

 #' mi <- aggregate(msi[[1]])

-#' msi <- aggregate(msi)

 NULL

 .check_aggregate_modifier <- function(data, x){

@@ -927,7 +926,6 @@ setMethod(f = "hasAggregateData",

 #' data(msi,package="RNAmodR")

 #' # modify() triggers the search for modifications in the data contained in

 #' # the Modifier or ModifierSet object

-#' msi <- modify(msi)

 #' mi <- modify(msi[[1]])

 NULL

@@ -75,7 +75,9 @@ for the colours of the individual bases. The names are expected to be

 data(msi,package="RNAmodR")

 mi <- msi[[1]]

 settings(mi)

+\dontrun{

 aggregate(mi)

 modify(mi)

+}

 getDataTrack(mi, "1", mainScore(mi))

 }

@@ -117,5 +117,4 @@ data(msi,package="RNAmodR")

 # the Modifier or ModifierSet object

 sdfl <- aggregate(e5sd)

 mi <- aggregate(msi[[1]])

-msi <- aggregate(msi)

 }

@@ -63,6 +63,5 @@ object and has to be implemented for each individual \code{Modifier} class.

 data(msi,package="RNAmodR")

 # modify() triggers the search for modifications in the data contained in

 # the Modifier or ModifierSet object

-msi <- modify(msi)

 mi <- modify(msi[[1]])

 }