# Generated by roxygen2: do not edit by hand

export("%>%")
export(RLRanges)
export(RLRangesFromRLBase)
export(RLSeq)
export(analyzeRLFS)
export(auxdata)
export(available_genomes)
export(corrAnalyze)
export(corrHeatmap)
export(featureEnrich)
export(geneAnnotation)
export(genomeMasks)
export(noiseAnalyze)
export(noiseComparisonPlot)
export(plotEnrichment)
export(plotFingerprint)
export(plotRLFSRes)
export(plotRLRegionOverlap)
export(plotTxFeatureOverlap)
export(predictCondition)
export(randomWindows)
export(report)
export(rlRegionTest)
export(rlbaseNoiseAnalyze)
export(rlresult)
export(rlsampleTxOl)
export(txFeatureOverlap)
import(caretEnsemble)
importClassesFrom(GenomicRanges,GenomicRanges)
importFrom(AnnotationHub,AnnotationHub)
importFrom(AnnotationHub,query)
importFrom(GenomeInfoDb,genome)
importFrom(GenomeInfoDb,getChromInfoFromUCSC)
importFrom(GenomeInfoDb,seqinfo)
importFrom(GenomeInfoDb,seqlevels)
importFrom(GenomeInfoDb,seqlevelsStyle)
importFrom(GenomicFeatures,genes)
importFrom(GenomicRanges,GRanges)
importFrom(GenomicRanges,reduce)
importFrom(GenomicRanges,show)
importFrom(GenomicRanges,strand)
importFrom(GenomicRanges,trim)
importFrom(RLHub,annots_full_hg38)
importFrom(RLHub,annots_full_mm10)
importFrom(RLHub,annots_primary_hg38)
importFrom(RLHub,annots_primary_mm10)
importFrom(RLHub,fft_model)
importFrom(RLHub,prep_features)
importFrom(RLHub,rlregions_meta)
importFrom(aws.s3,s3readRDS)
importFrom(callr,r)
importFrom(dplyr,"%>%")
importFrom(dplyr,.data)
importFrom(dplyr,arrange)
importFrom(dplyr,as_tibble)
importFrom(dplyr,bind_cols)
importFrom(dplyr,bind_rows)
importFrom(dplyr,desc)
importFrom(dplyr,distinct)
importFrom(dplyr,filter)
importFrom(dplyr,mutate)
importFrom(dplyr,relocate)
importFrom(dplyr,row_number)
importFrom(dplyr,sample_n)
importFrom(dplyr,select)
importFrom(dplyr,tibble)
importFrom(methods,is)
importFrom(methods,new)
importFrom(methods,prototype)
importFrom(methods,slot)
importFrom(methods,slotNames)
importFrom(regioneR,randomizeRegions)
importFrom(regioneR,toGRanges)
importFrom(stats,acf)
importFrom(stats,fft)
importFrom(stats,ks.test)
importFrom(stats,predict)
importFrom(valr,bed_fisher)
importFrom(valr,bed_intersect)
importFrom(valr,bed_map)
importFrom(valr,bed_merge)
importFrom(valr,bed_reldist)
importFrom(valr,gr_to_bed)