Genome-Wide Nucleosome Positioning using High-Throughput Short-Read Data (MNase-Seq) ===================== [](https://travis-ci.org/ArnaudDroitLab/RJMCMCNucleosomes) [](https://codecov.io/gh/ArnaudDroitLab/RJMCMCNucleosomes) This package uses informative Multinomial-Dirichlet prior in a t-mixture with reversible jump estimation of nucleosome positions for genome-wide profiling. This package is in R with an optimized section in C++. ## Citing ## If you use this package for a publication, we would ask you to cite the following: > Samb R, Khadraoui K, Belleau P, et al. (2015). "Using informative Multinomial-Dirichlet prior in a t-mixture with reversible jump estimation of nucleosome positions for genome-wide profiling." Statistical Applications in Genetics and Molecular Biology. Volume 14, Issue 6, Pages 517-532, ISSN (Online) 1544-6115, ISSN (Print) 2194-6302, December 2015, <a href="http://dx.doi.org/10.1515/sagmb-2014-0098">doi: 10.1515/sagmb-2014-0098</a> ## Bioconductor Package ## [](http://bioconductor.org/packages/release/bioc/html/RJMCMCNucleosomes "Bioconductor status") _RJMCMCNucleosomes_ is now an official package of [Bioconductor](http://bioconductor.org/). The current release can be directly downloaded from their website: [Current release](http://bioconductor.org/packages/RJMCMCNucleosomes/) ## Notes ## To use this current _RJMCMCNucleosomes_ version, the use of the Rcpp package is mandatory. This implies having GSL library installed. ## Authors ## [Pascal Belleau](http://ca.linkedin.com/in/pascalbelleau "Pascal Belleau"), [Rawane Samb](https://ca.linkedin.com/in/rawanesamb "Rawane Samb"), [Astrid Desch&ecirc;nes](http://ca.linkedin.com/in/astriddeschenes "Astrid Desch&ecirc;nes"), [Khader Khadraoui](http://archimede.mat.ulaval.ca/pages/khaderk/ "Khader Khadraoui"), [Lajmi Lakhal-Chaieb](https://www.researchgate.net/profile/Lajmi_Lakhal-Chaieb "Lajmi Lakhal-Chaieb") and [Arnaud Droit](http://ca.linkedin.com/in/drarnaud "Arnaud Droit"). See [AD Lab](http://compbio.ulaval.ca/ "AD Lab") website. ## Maintainer ## [Astrid Desch&ecirc;nes](http://ca.linkedin.com/in/astriddeschenes "Astrid Desch&ecirc;nes") ## License ## This package and the underlying _RJMCMCNucleosomes_ code are distributed under the Artistic license 2.0. You are free to use and redistribute this software. For more information on Artistic 2.0 License see [http://opensource.org/licenses/Artistic-2.0](http://opensource.org/licenses/Artistic-2.0) ## Bugs/Feature requests ## If you have any bugs or feature requests, [let us know](https://github.com/ArnaudDroitLab/RJMCMCNucleosomes/issues). Thanks!