1. RITAN
  2. Graph
Graph of RITAN
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  • 487e78f (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 10:57:21 -0400;
  • 13a63fd (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 10:57:21 -0400;
  • 3d1eccb bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:54:17 -0400;
  • 8d4c799 (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:54:17 -0400;
  • 61c87e5 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:15:42 -0400;
  • 17d6547 (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:15:42 -0400;
  • 0d84e5c bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:40:54 +0000;
  • 3d2e50b (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:40:54 +0000;
  • b6f463c roxygen man updates by Zimmermann, Michael <mtzimmermann@mcw.edu> 2022-04-04 14:52:37 -0500;
  • 8f9187d update to use BioC packages rather than external files by Zimmermann, Michael <mtzimmermann@mcw.edu> 2022-04-04 14:52:19 -0500;
  • 4a38fbc update convensions and docs by Zimmermann, Michael <mtzimmermann@mcw.edu> 2022-04-04 14:51:56 -0500;
  • 8cdf804 explicit methods::is by Zimmermann, Michael <mtzimmermann@mcw.edu> 2022-04-04 11:57:41 -0500;
  • d1e7c59 bugfixes and citation update by Zimmermann, Michael <mtzimmermann@mcw.edu> 2022-04-04 10:59:14 -0500;
  • 08b28e0 added cached all_symbols to enrichment_symbols example by Zimmermann, Michael <mtzimmermann@mcw.edu> 2022-04-04 10:54:07 -0500;
  • 04b8cd4 added CITATION to our paper by Zimmermann, Michael <mtzimmermann@mcw.edu> 2022-04-04 09:55:18 -0500;
  • d06fec3 bugfix - missing not in writeGMT QC by Zimmermann, Michael <mtzimmermann@mcw.edu> 2022-04-04 09:33:10 -0500;
  • a9884f1 added option to remove resource names in enrichment plots by Zimmermann, Michael <mtzimmermann@mcw.edu> 2022-04-04 09:31:34 -0500;
  • a28dfc2 undeprecate by lshep <lori.shepherd@roswellpark.org> 2022-03-31 11:45:30 -0400;
  • 26d950c Deprecation by lshep <lori.shepherd@roswellpark.org> 2021-11-15 13:38:24 -0500;
  • 4f8f86c bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:35:18 +0000;
  • e2ef1ac (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:35:18 +0000;
  • 0e76766 bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:27:48 +0000;
  • ded8612 (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:27:48 +0000;
  • 788baa0 bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:24:14 -0400;
  • 73d26c8 (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:24:14 -0400;
  • 1553373 bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 19:07:44 +0000;
  • eb467d9 (origin/RELEASE_3_11, RELEASE_3_11) bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 19:07:44 +0000;
  • 2881e4e syntax fixes for BioC by Zimmermann, Michael <mtzimmermann@mcw.edu> 2020-02-18 12:07:20 -0600;
  • 7a0173d general check() cleanup by Zimmermann, Michael <mtzimmermann@mcw.edu> 2020-02-05 13:56:23 -0600;
  • f02aeac bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:42:20 -0400;
  • 905d244 (origin/RELEASE_3_10, RELEASE_3_10) bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:10:27 -0400;
  • 4127678 bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 12:14:51 -0400;
  • ffb96a8 (origin/RELEASE_3_9, RELEASE_3_9) bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 11:54:07 -0400;
  • eb234b0 Merge changes between BioC and GitHub by Zimmermann, Michael <mtzimmermann@mcw.edu> 2019-04-18 23:13:34 -0500;
  • 2247489 Update README.md by Michael T. Zimmermann <MTZimmer@users.noreply.github.com> 2019-04-08 10:29:12 -0500;
  • cdbc12d Update README.md by Michael T. Zimmermann <MTZimmer@users.noreply.github.com> 2019-04-08 10:26:41 -0500;
  • 25dff26 Update NAMESPACE by Michael T. Zimmermann <MTZimmer@users.noreply.github.com> 2019-04-02 09:35:35 -0500;
  • c68a113 Update README.md by Michael T. Zimmermann <MTZimmer@users.noreply.github.com> 2019-03-30 22:55:05 -0500;
  • 576add6 Update README.md by Michael T. Zimmermann <MTZimmer@users.noreply.github.com> 2019-03-30 22:49:47 -0500;
  • ee64586 Update README.md by Michael T. Zimmermann <MTZimmer@users.noreply.github.com> 2019-03-30 22:37:13 -0500;
  • 016d38e Update README.md by Michael T. Zimmermann <MTZimmer@users.noreply.github.com> 2019-03-30 14:16:51 -0500;
  • 91a0cad Update README.md by Michael T. Zimmermann <MTZimmer@users.noreply.github.com> 2019-03-29 14:04:49 -0500;
  • f5a2408 bump x.y.z versions to odd y after creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:54:37 -0400;
  • 581a092 (origin/RELEASE_3_8, RELEASE_3_8) bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:42:05 -0400;
  • df9fd61 enrichment.Rmd bugfix by Michael T. Zimmermann <MTZimmer@users.noreply.github.com> 2018-10-10 16:09:39 -0500;
  • c8d231a additional updates from BiocInstaller to BiocManager by LiNk-NY <marcel.ramosperez@roswellpark.org> 2018-09-06 15:52:46 +0000;
  • 9906fb8 format updates to README by Michael T. Zimmermann <MTZimmer@users.noreply.github.com> 2018-09-03 08:59:30 -0500;
  • 8b75fd5 Merge branch 'master' of https://github.com/MTZimmer/RITAN by Michael Zimmermann 2017-10-18 <mtzimmermann@mcw.edu> 2018-09-01 23:51:01 -0500;
  • ede69c2 added examples for loading resources by Michael T. Zimmermann <MTZimmer@users.noreply.github.com> 2018-09-01 23:45:55 -0500;
  • 9b967bf extended Qs in README; added vignette refs by Michael T. Zimmermann <MTZimmer@users.noreply.github.com> 2018-09-01 21:07:06 -0500;
  • 36423d5 replace BiocInstaller biocLite mentions with BiocManager by LiNk-NY <mramos09@gmail.com> 2018-08-30 13:55:26 -0400;
  • 430ab20 (origin/RELEASE_3_7, RELEASE_3_7) bugfix to finish removing ProNet by Michael Zimmermann 2017-10-18 <mtzimmermann@mcw.edu> 2018-08-13 08:31:20 -0500;
  • 2ceafd0 bugfix: syntax fixed by Michael Zimmermann 2017-10-18 <mtzimmermann@mcw.edu> 2018-08-10 00:09:54 -0500;
  • be1e384 removed ProNet and accompanying features by Michael Zimmermann 2017-10-18 <mtzimmermann@mcw.edu> 2018-08-07 00:43:44 -0500;
  • ae7642b bugfix to finish removing ProNet by Michael Zimmermann 2017-10-18 <mtzimmermann@mcw.edu> 2018-08-13 08:31:20 -0500;
  • 5c74731 bugfix: syntax fixed by Michael Zimmermann 2017-10-18 <mtzimmermann@mcw.edu> 2018-08-10 00:09:54 -0500;
  • e484c45 removed ProNet and accompanying features by Michael Zimmermann 2017-10-18 <mtzimmermann@mcw.edu> 2018-08-07 00:43:44 -0500;
  • 29996f6 bugfix and update maintainer email by Michael Zimmermann 2017-10-18 <mtzimmermann@mcw.edu> 2018-05-24 13:51:45 -0500;
  • a02f14d updating imports to populate NAMESPACE by Michael Zimmermann 2017-10-18 <mtzimmermann@mcw.edu> 2018-05-25 10:03:27 -0500;
  • 9787d1a Undeprecate by lshep <shepherl@gmail.com> 2018-05-25 07:31:08 -0400;
  • f2fba0f Merge branch 'master' of git.bioconductor.org:packages/RITAN by Michael Zimmermann 2017-10-18 <mtzimmermann@mcw.edu> 2018-05-25 01:17:48 -0500;
  • b5fb6c1 updated ignore files by Michael Zimmermann 2017-10-18 <mtzimmermann@mcw.edu> 2018-05-25 01:07:03 -0500;
  • 039108a updated Version number by Michael Zimmermann 2017-10-18 <mtzimmermann@mcw.edu> 2018-05-25 01:01:07 -0500;
  • 326eaca bugfix and update maintainer email by Michael Zimmermann 2017-10-18 <mtzimmermann@mcw.edu> 2018-05-24 13:51:45 -0500;
  • 8b3d004 Package Deprecation by lshep <shepherl@gmail.com> 2018-05-23 12:25:47 -0400;
  • 358c04b bump x.y.z versions to odd y after creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:41:43 -0400;
  • 589b496 bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:35:46 -0400;
  • a12aa4f Resolve DESCRIPTION merge conflict by Michael Zimmermann 2017-10-18 <mtzimmermann@mcw.edu> 2018-03-09 23:22:08 -0600;
  • c2d001c version bump by Michael Zimmermann 2017-10-18 <mtzimmermann@boyd.cm.cluster> 2018-03-09 23:07:27 -0600;
  • f927067 standardized input terminology. updated vignettes. by Michael Zimmermann 2017-10-18 <mtzimmermann@boyd.cm.cluster> 2018-03-09 17:04:02 -0600;
  • 8cdedf8 bugfix: STRING_cache writable? updated stringsAsFactors. by Michael Zimmermann 2017-10-18 <mtzimmermann@boyd.cm.cluster> 2018-02-24 00:12:40 -0600;
  • a5fcec0 updated vignette titles by Michael Zimmermann 2017-10-18 <mtzimmermann@boyd.cm.cluster> 2018-01-29 12:15:16 -0600;
  • 7285445 bump x.y.z versions to odd y after creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:54:31 -0400;
  • 3e5ba38 (origin/RELEASE_3_6, RELEASE_3_6) bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:41:29 -0400;
  • 3c61224 version bump for BioC by Michael Zimmermann <zimmermann.michael@mayo.edu> 2017-10-10 22:44:23 -0500;
  • f1115f8 initial work on multi-tissue vignette by Michael Zimmermann <zimmermann.michael@mayo.edu> 2017-10-10 22:42:43 -0500;
  • 64d2915 bugfix example in plot.term_enrichment by Michael Zimmermann <zimmermann.michael@mayo.edu> 2017-10-03 08:46:54 -0500;
  • cdfc619 bugfix geneset_overlap example by Michael Zimmermann <zimmermann.michael@mayo.edu> 2017-10-03 08:25:37 -0500;
  • fe51bcc bugfix from igraph by Michael Zimmermann <zimmermann.michael@mayo.edu> 2017-10-02 14:27:37 -0500;
  • e5117ec merge conflicts with bioc by Michael Zimmermann <zimmermann.michael@mayo.edu> 2017-09-26 15:02:20 -0500;
  • 6f77bb3 misc and bugfix for unsupported network warning by Michael Zimmermann <zimmermann.michael@mayo.edu> 2017-09-20 22:10:33 -0500;
  • 811c939 Added placeholders for new vignettes by Michael Zimmermann <zimmermann.michael@mayo.edu> 2017-09-20 12:24:44 -0500;
  • 01d23f1 added filter_to_intersetion option to term_enrichment() by Michael Zimmermann <zimmermann.michael@mayo.edu> 2017-09-20 10:29:28 -0500;
  • b3b4e4b updated documentation by Michael Zimmermann <zimmermann.michael@mayo.edu> 2017-09-20 09:18:52 -0500;
  • f7e6dc9 removed "additional functions" section to prevent confusion by Michael Zimmermann <zimmermann.michael@mayo.edu> 2017-09-20 08:25:27 -0500;
  • 7e645fb split "resource relationships" into its own vignette by Michael Zimmermann <zimmermann.michael@mayo.edu> 2017-09-20 08:14:27 -0500;
  • c97dde1 export as.graph by Michael Zimmermann <zimmermann.michael@mayo.edu> 2017-09-20 00:22:13 -0500;
  • 067897f export geneset_overlap by Michael Zimmermann <zimmermann.michael@mayo.edu> 2017-09-20 00:05:56 -0500;
  • dfeae15 added bridging example added geneset_overlap() example by Michael Zimmermann <zimmermann.michael@mayo.edu> 2017-09-19 23:33:44 -0500;
  • 6d5b27b basic improvements to icon_test by Michael Zimmermann <zimmermann.michael@mayo.edu> 2017-09-05 22:44:37 -0500;
  • c569dfe added attr() to network_overlap results by Michael Zimmermann <zimmermann.michael@mayo.edu> 2017-09-05 22:43:32 -0500;
  • 5822d14 simplify geneset_overlap by Michael Zimmermann <zimmermann.michael@mayo.edu> 2017-09-04 21:27:30 -0500;
  • 844c601 bugfix in summary by Michael Zimmermann <zimmermann.michael@mayo.edu> 2017-07-21 10:24:36 -0500;
  • afec61d updated documentation by MTZimmer <zimmermann.michael@mayo.edu> 2017-06-19 14:31:15 -0500;
  • 853394c improved handling for gene names from STRING by Michael Zimmermann <zimmermann.michael@mayo.edu> 2017-06-19 12:47:58 -0500;
  • cfe33ae added plot.term_enrichment and retaining all source labels for interactions by Michael Zimmermann <zimmermann.michael@mayo.edu> 2017-06-13 13:10:08 -0500;
  • 73ed651 readSIF edge type handling by Michael Zimmermann <zimmermann.michael@mayo.edu> 2017-05-22 10:24:26 -0500;
  • 5b21262 version bump to trigger BioC build by Michael Zimmermann <zimmermann.michael@mayo.edu> 2017-05-10 09:59:30 -0500;
  • 2fa1dac added more informative error messages by Michael Zimmermann <zimmermann.michael@mayo.edu> 2017-05-10 09:53:19 -0500;
  • 10cb4d6 bump x.y.z versions to odd y after creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:50:57 +0000;