Package: RITAN
Type: Package
Title: Rapid Integration of Term Annotation and Network resources
Version: 1.22.0
Authors@R: c(person("Michael", "Zimmermann", role = c("aut", "cre"),
                    email = "mtzimmermann@mcw.edu"))
Description: Tools for comprehensive gene set enrichment and extraction of
    multi-resource high confidence subnetworks. RITAN facilitates bioinformatic
    tasks for enabling network biology research.
LazyData: TRUE
Depends:
    R (>= 4.0),
Imports:
    graphics,
    methods,
    stats,
    utils,
    grid,
    gridExtra,
    reshape2,
    gplots,
    ggplot2,
    plotrix,
    RColorBrewer,
    STRINGdb,
    MCL,
    linkcomm,
    dynamicTreeCut,
    gsubfn,
    hash,
    png,
    sqldf,
    igraph,
    BgeeDB,
    knitr,
    RITANdata,
    GenomicFeatures,
    ensembldb,
    AnnotationFilter,
    EnsDb.Hsapiens.v86
VignetteBuilder: knitr
Collate:
    'lib_enrichment.R'
    'lib_network.R'
    'interconnectivity_functions.R'
RoxygenNote: 7.1.1
Suggests:
    rmarkdown,
    BgeeDB
License: file LICENSE
biocViews: QualityControl, Network, NetworkEnrichment,
    NetworkInference, GeneSetEnrichment, FunctionalGenomics,
    GraphAndNetwork
NeedsCompilation: no