Simone authored on 21/03/2021 14:34:30
Simone authored on 09/06/2019 11:05:22
Simone authored on 16/09/2018 07:19:24
Simone authored on 16/08/2018 09:03:55
| ... | ... |
@@ -2,7 +2,6 @@ |
| 2 | 2 |
% Please edit documentation in R/web-services.R |
| 3 | 3 |
\name{compile_query}
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| 4 | 4 |
\alias{compile_query}
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-\alias{compile_query}
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|
| 6 | 5 |
\alias{compile_query_fromfile}
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| 7 | 6 |
\title{Compile GMQL query}
|
| 8 | 7 |
\usage{
|
| ... | ... |
@@ -29,7 +28,7 @@ using the proper GMQL web service available on a remote server |
| 29 | 28 |
|
| 30 | 29 |
## Login to GMQL REST services suite as guest |
| 31 | 30 |
|
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-remote_url = "http://genomic.deib.polimi.it/gmql-rest-r/" |
|
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+remote_url = "http://www.gmql.eu/gmql-rest/" |
|
| 33 | 32 |
login_gmql(remote_url) |
| 34 | 33 |
|
| 35 | 34 |
## This statement gets the query as text string and runs the compile |
Simone authored on 19/01/2018 11:06:58
| ... | ... |
@@ -14,7 +14,7 @@ compile_query_fromfile(url, filePath) |
| 14 | 14 |
\item{url}{string url of server: It must contain the server address
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| 15 | 15 |
and base url; service name is added automatically} |
| 16 | 16 |
|
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-\item{query}{string text of query}
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+\item{query}{string text of a GMQL query}
|
|
| 18 | 18 |
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| 19 | 19 |
\item{filePath}{string path of txt file containing a GMQL query}
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| 20 | 20 |
} |
| ... | ... |
@@ -32,11 +32,11 @@ using the proper GMQL web service available on a remote server |
| 32 | 32 |
remote_url = "http://genomic.deib.polimi.it/gmql-rest-r/" |
| 33 | 33 |
login_gmql(remote_url) |
| 34 | 34 |
|
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-## This statement get the query as text string and run the compile |
|
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+## This statement gets the query as text string and runs the compile |
|
| 36 | 36 |
## web service |
| 37 | 37 |
|
| 38 | 38 |
compile_query(remote_url, "DATASET = SELECT() Example_Dataset_1; |
| 39 |
-MATERIALIZE DATASET INTO RESULT_DS;") |
|
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+ MATERIALIZE DATASET INTO RESULT_DS;") |
|
| 40 | 40 |
|
| 41 | 41 |
|
| 42 | 42 |
## This statement defines the path to the file "query1.txt" in the |
| ... | ... |
@@ -47,7 +47,7 @@ test_path <- system.file("example", package = "RGMQL")
|
| 47 | 47 |
test_query <- file.path(test_path, "query1.txt") |
| 48 | 48 |
compile_query_fromfile(remote_url, test_query) |
| 49 | 49 |
|
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-## logout from GMQL REST services suite |
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+## Logout from GMQL REST services suite |
|
| 51 | 51 |
|
| 52 | 52 |
logout_gmql(remote_url) |
| 53 | 53 |
|
Simone authored on 11/01/2018 13:10:15
| ... | ... |
@@ -14,7 +14,7 @@ compile_query_fromfile(url, filePath) |
| 14 | 14 |
\item{url}{string url of server: It must contain the server address
|
| 15 | 15 |
and base url; service name is added automatically} |
| 16 | 16 |
|
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-\item{query}{string text of the query}
|
|
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+\item{query}{string text of query}
|
|
| 18 | 18 |
|
| 19 | 19 |
\item{filePath}{string path of txt file containing a GMQL query}
|
| 20 | 20 |
} |
| ... | ... |
@@ -38,11 +38,6 @@ login_gmql(remote_url) |
| 38 | 38 |
compile_query(remote_url, "DATASET = SELECT() Example_Dataset_1; |
| 39 | 39 |
MATERIALIZE DATASET INTO RESULT_DS;") |
| 40 | 40 |
|
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-## logout from GMQL REST services suite |
|
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- |
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-logout_gmql(remote_url) |
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- |
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-\dontrun{
|
|
| 46 | 41 |
|
| 47 | 42 |
## This statement defines the path to the file "query1.txt" in the |
| 48 | 43 |
## subdirectory "example" of the package "RGMQL" and run the compile |
| ... | ... |
@@ -51,6 +46,9 @@ logout_gmql(remote_url) |
| 51 | 46 |
test_path <- system.file("example", package = "RGMQL")
|
| 52 | 47 |
test_query <- file.path(test_path, "query1.txt") |
| 53 | 48 |
compile_query_fromfile(remote_url, test_query) |
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-} |
|
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+ |
|
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+## logout from GMQL REST services suite |
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+ |
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+logout_gmql(remote_url) |
|
| 55 | 53 |
|
| 56 | 54 |
} |
Simone authored on 06/12/2017 17:47:26
| ... | ... |
@@ -16,23 +16,38 @@ and base url; service name is added automatically} |
| 16 | 16 |
|
| 17 | 17 |
\item{query}{string text of the query}
|
| 18 | 18 |
|
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-\item{filePath}{string path of txt files containing a GMQL query}
|
|
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+\item{filePath}{string path of txt file containing a GMQL query}
|
|
| 20 | 20 |
} |
| 21 | 21 |
\value{
|
| 22 | 22 |
None |
| 23 | 23 |
} |
| 24 | 24 |
\description{
|
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-It compiles the GMQL query into repository taken from file or insert as text |
|
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-string, using the proper GMQL web service available on a remote server |
|
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+It compiles a GMQL query taken from file or inserted as text string, |
|
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+using the proper GMQL web service available on a remote server |
|
| 27 | 27 |
} |
| 28 | 28 |
\examples{
|
| 29 | 29 |
|
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-remote_url = "http://genomic.elet.polimi.it/gmql-rest-r/" |
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+## Login to GMQL REST services suite as guest |
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+ |
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+remote_url = "http://genomic.deib.polimi.it/gmql-rest-r/" |
|
| 31 | 33 |
login_gmql(remote_url) |
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-compile_query(remote_url, "DATASET = SELECT() HG19_TCGA_dnaseq; |
|
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+ |
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+## This statement get the query as text string and run the compile |
|
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+## web service |
|
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+ |
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+compile_query(remote_url, "DATASET = SELECT() Example_Dataset_1; |
|
| 33 | 39 |
MATERIALIZE DATASET INTO RESULT_DS;") |
| 34 | 40 |
|
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+## logout from GMQL REST services suite |
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+ |
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+logout_gmql(remote_url) |
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+ |
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| 35 | 45 |
\dontrun{
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+ |
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+## This statement defines the path to the file "query1.txt" in the |
|
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+## subdirectory "example" of the package "RGMQL" and run the compile |
|
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+## web service |
|
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+ |
|
| 36 | 51 |
test_path <- system.file("example", package = "RGMQL")
|
| 37 | 52 |
test_query <- file.path(test_path, "query1.txt") |
| 38 | 53 |
compile_query_fromfile(remote_url, test_query) |
Simone authored on 21/11/2017 13:43:55
| ... | ... |
@@ -1,29 +1,41 @@ |
| 1 | 1 |
% Generated by roxygen2: do not edit by hand |
| 2 |
-% Please edit documentation in R/queryOp.R |
|
| 2 |
+% Please edit documentation in R/web-services.R |
|
| 3 | 3 |
\name{compile_query}
|
| 4 | 4 |
\alias{compile_query}
|
| 5 |
+\alias{compile_query}
|
|
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+\alias{compile_query_fromfile}
|
|
| 5 | 7 |
\title{Compile GMQL query}
|
| 6 | 8 |
\usage{
|
| 7 | 9 |
compile_query(url, query) |
| 10 |
+ |
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+compile_query_fromfile(url, filePath) |
|
| 8 | 12 |
} |
| 9 | 13 |
\arguments{
|
| 10 | 14 |
\item{url}{string url of server: It must contain the server address
|
| 11 | 15 |
and base url; service name is added automatically} |
| 12 | 16 |
|
| 13 | 17 |
\item{query}{string text of the query}
|
| 18 |
+ |
|
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+\item{filePath}{string path of txt files containing a GMQL query}
|
|
| 14 | 20 |
} |
| 15 | 21 |
\value{
|
| 16 | 22 |
None |
| 17 | 23 |
} |
| 18 | 24 |
\description{
|
| 19 |
-It compiles a GMQL query as single string using the proper GMQL web service |
|
| 20 |
-available on a remote server |
|
| 25 |
+It compiles the GMQL query into repository taken from file or insert as text |
|
| 26 |
+string, using the proper GMQL web service available on a remote server |
|
| 21 | 27 |
} |
| 22 | 28 |
\examples{
|
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-remote_url = "http://130.186.13.219/gmql-rest" |
|
| 24 |
-\dontrun{
|
|
| 29 |
+ |
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+remote_url = "http://genomic.elet.polimi.it/gmql-rest-r/" |
|
| 25 | 31 |
login_gmql(remote_url) |
| 26 | 32 |
compile_query(remote_url, "DATASET = SELECT() HG19_TCGA_dnaseq; |
| 27 | 33 |
MATERIALIZE DATASET INTO RESULT_DS;") |
| 34 |
+ |
|
| 35 |
+\dontrun{
|
|
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+test_path <- system.file("example", package = "RGMQL")
|
|
| 37 |
+test_query <- file.path(test_path, "query1.txt") |
|
| 38 |
+compile_query_fromfile(remote_url, test_query) |
|
| 28 | 39 |
} |
| 40 |
+ |
|
| 29 | 41 |
} |
Simone authored on 16/11/2017 10:37:54
| ... | ... |
@@ -20,10 +20,10 @@ It compiles a GMQL query as single string using the proper GMQL web service |
| 20 | 20 |
available on a remote server |
| 21 | 21 |
} |
| 22 | 22 |
\examples{
|
| 23 |
- |
|
| 24 | 23 |
remote_url = "http://130.186.13.219/gmql-rest" |
| 24 |
+\dontrun{
|
|
| 25 | 25 |
login_gmql(remote_url) |
| 26 | 26 |
compile_query(remote_url, "DATASET = SELECT() HG19_TCGA_dnaseq; |
| 27 | 27 |
MATERIALIZE DATASET INTO RESULT_DS;") |
| 28 |
- |
|
| 28 |
+} |
|
| 29 | 29 |
} |
Simone authored on 08/11/2017 13:30:29
| 1 | 1 |
new file mode 100644 |
| ... | ... |
@@ -0,0 +1,29 @@ |
| 1 |
+% Generated by roxygen2: do not edit by hand |
|
| 2 |
+% Please edit documentation in R/queryOp.R |
|
| 3 |
+\name{compile_query}
|
|
| 4 |
+\alias{compile_query}
|
|
| 5 |
+\title{Compile GMQL query}
|
|
| 6 |
+\usage{
|
|
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+compile_query(url, query) |
|
| 8 |
+} |
|
| 9 |
+\arguments{
|
|
| 10 |
+\item{url}{string url of server: It must contain the server address
|
|
| 11 |
+and base url; service name is added automatically} |
|
| 12 |
+ |
|
| 13 |
+\item{query}{string text of the query}
|
|
| 14 |
+} |
|
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+\value{
|
|
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+None |
|
| 17 |
+} |
|
| 18 |
+\description{
|
|
| 19 |
+It compiles a GMQL query as single string using the proper GMQL web service |
|
| 20 |
+available on a remote server |
|
| 21 |
+} |
|
| 22 |
+\examples{
|
|
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+ |
|
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+remote_url = "http://130.186.13.219/gmql-rest" |
|
| 25 |
+login_gmql(remote_url) |
|
| 26 |
+compile_query(remote_url, "DATASET = SELECT() HG19_TCGA_dnaseq; |
|
| 27 |
+MATERIALIZE DATASET INTO RESULT_DS;") |
|
| 28 |
+ |
|
| 29 |
+} |