1. RGMQL
  2. Commit 4c2228386e5c72dcdd7121cef88dc65139e81f56
Browse code

minor fix

Simone authored on 18/04/2018 07:11:16
Showing 6 changed files
inst/example/EXON/files/test.xml
History View file @ 4c22283
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similarity index 100%
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rename from inst/example/EXON/files/test.xml
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rename to inst/example/EXON/files/test.schema
inst/example/files/S_1.gtf
History View file @ 4c22283
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new file mode 100644
... ... 
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+##gff-version 2
2 
+##source-version rtracklayer 1.36.6
3 
+##date 2018-04-17
4 
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inst/example/files/S_1.gtf.meta
History View file @ 4c22283
0 575 
new file mode 100644
... ... 
@@ -0,0 +1,5 @@
1 
+annotation_type	exons
2 
+assembly	hg19
3 
+name	RefSeqGeneExons
4 
+original_provider	RefSeq
5 
+provider	POLIMI
inst/example/files/granges.xml
History View file @ 4c22283
0 6 
new file mode 100644
... ... 
@@ -0,0 +1,14 @@
1 
+<?xml version="1.0" encoding="UTF-8"?>
2 
+<gmqlSchemaCollection xmlns="http://genomic.elet.polimi.it/entities" name="DatasetName_SCHEMAS" type="gtf" coordinate_system="1-based">
3 
+  <gmqlSchema>
4 
+    <field type="STRING">seqname</field>
5 
+    <field type="STRING">source</field>
6 
+    <field type="STRING">feature</field>
7 
+    <field type="LONG">start</field>
8 
+    <field type="LONG">end</field>
9 
+    <field type="DOUBLE">score</field>
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+    <field type="STRING">strand</field>
11 
+    <field type="STRING">frame</field>
12 
+    <field type="STRING">name</field>
13 
+  </gmqlSchema>
14 
+</gmqlSchemaCollection>
vignettes/.build.timestamp
History View file @ 4c22283
0 15 
deleted file mode 100644
vignettes/RGMQL-vignette.R
History View file @ 4c22283
1 16 
deleted file mode 100644
... ... 
@@ -1,9 +0,0 @@
1 
-## ---- initialization-----------------------------------------------------
2 
-library('RGMQL')
3 
-
4 
-## ---- initialization_RGMQLlib--------------------------------------------
5 
-library('RGMQLlib')
6 
-
7 
-## ---- init---------------------------------------------------------------
8 
-init_gmql()
9 
-