Simone authored on 25/01/2018 09:58:45
Showing 2 changed files

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@@ -123,7 +123,7 @@ read_gmql <- function(dataset, parser = "CustomParser", is_local = TRUE,
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     }
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     response <- WrappeR$readDataset(dataset, parser_name, is_local, is_GMQL, 
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-                                        schema_matrix, schema_XML)
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+                    schema_matrix, schema_XML, coords_sys, type)
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     error <- strtoi(response[1])
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     data <- response[2]
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     if(error)
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@@ -450,7 +450,7 @@ Or the user can execute a query reading it directly from file (e.g., the
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 "query1.txt" file in the "example" subdirectory of the RGMQL package):
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 ```{r, run_from_file, eval = FALSE}
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 query_path <- system.file("example", "query1.txt", package = "RGMQL")
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-job <- run_query_fromfile(test_url, "query1", query_path, output_gtf = FALSE)
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+job <- run_query_fromfile(test_url, query_path, output_gtf = FALSE)
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 ```
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 Once run, query continues on the remote server while *run_query()* 
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@@ -750,5 +750,12 @@ Each metadata column is named using *region_attributes* concatenated with
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 the function input parameter *suffix*.
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 By default *suffix* correspond to a metadata: *antobody_target*.
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+## Metadata
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+
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+A specific metadata attribute, associated to sample of GMQL dataset, can 
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+contain mmultiple values, i.e more values for the same metadata-key attributes; 
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+es:
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+
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+
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 # References
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