... | ... |
@@ -123,7 +123,7 @@ read_gmql <- function(dataset, parser = "CustomParser", is_local = TRUE, |
123 | 123 |
} |
124 | 124 |
|
125 | 125 |
response <- WrappeR$readDataset(dataset, parser_name, is_local, is_GMQL, |
126 |
- schema_matrix, schema_XML) |
|
126 |
+ schema_matrix, schema_XML, coords_sys, type) |
|
127 | 127 |
error <- strtoi(response[1]) |
128 | 128 |
data <- response[2] |
129 | 129 |
if(error) |
... | ... |
@@ -450,7 +450,7 @@ Or the user can execute a query reading it directly from file (e.g., the |
450 | 450 |
"query1.txt" file in the "example" subdirectory of the RGMQL package): |
451 | 451 |
```{r, run_from_file, eval = FALSE} |
452 | 452 |
query_path <- system.file("example", "query1.txt", package = "RGMQL") |
453 |
-job <- run_query_fromfile(test_url, "query1", query_path, output_gtf = FALSE) |
|
453 |
+job <- run_query_fromfile(test_url, query_path, output_gtf = FALSE) |
|
454 | 454 |
``` |
455 | 455 |
|
456 | 456 |
Once run, query continues on the remote server while *run_query()* |
... | ... |
@@ -750,5 +750,12 @@ Each metadata column is named using *region_attributes* concatenated with |
750 | 750 |
the function input parameter *suffix*. |
751 | 751 |
By default *suffix* correspond to a metadata: *antobody_target*. |
752 | 752 |
|
753 |
+## Metadata |
|
754 |
+ |
|
755 |
+A specific metadata attribute, associated to sample of GMQL dataset, can |
|
756 |
+contain mmultiple values, i.e more values for the same metadata-key attributes; |
|
757 |
+es: |
|
758 |
+ |
|
759 |
+ |
|
753 | 760 |
# References |
754 | 761 |
|