Browse code

minor fix

Simone authored on 16/09/2018 07:19:24
Showing14 changed files

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@@ -3,17 +3,29 @@
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 \name{AGGREGATES-Object}
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 \alias{AGGREGATES-Object}
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 \alias{SUM}
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+\alias{AGGREGATES-Object}
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 \alias{COUNT}
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+\alias{AGGREGATES-Object}
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 \alias{COUNTSAMP}
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+\alias{AGGREGATES-Object}
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 \alias{MIN}
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+\alias{AGGREGATES-Object}
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 \alias{MAX}
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+\alias{AGGREGATES-Object}
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 \alias{AVG}
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+\alias{AGGREGATES-Object}
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 \alias{MEDIAN}
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+\alias{AGGREGATES-Object}
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 \alias{STD}
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+\alias{AGGREGATES-Object}
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 \alias{BAG}
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+\alias{AGGREGATES-Object}
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 \alias{BAGD}
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+\alias{AGGREGATES-Object}
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 \alias{Q1}
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+\alias{AGGREGATES-Object}
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 \alias{Q2}
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+\alias{AGGREGATES-Object}
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 \alias{Q3}
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 \title{AGGREGATES object class constructor}
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 \usage{
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@@ -2,6 +2,7 @@
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 % Please edit documentation in R/web-services.R
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 \name{compile_query}
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 \alias{compile_query}
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+\alias{compile_query}
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 \alias{compile_query_fromfile}
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 \title{Compile GMQL query}
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 \usage{
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@@ -3,6 +3,7 @@
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 \name{Cover-Param}
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 \alias{Cover-Param}
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 \alias{ALL}
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+\alias{Cover-Param}
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 \alias{ANY}
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 \title{PARAM object class constructor}
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 \usage{
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@@ -3,6 +3,7 @@
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 \docType{methods}
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 \name{cover}
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 \alias{cover}
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+\alias{cover}
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 \alias{cover,GMQLDataset-method}
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 \title{Method cover}
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 \usage{
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@@ -4,10 +4,15 @@
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 \alias{DISTAL-Object}
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 \alias{DL}
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 \alias{DG}
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+\alias{DISTAL-Object}
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 \alias{DLE}
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+\alias{DISTAL-Object}
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 \alias{DGE}
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+\alias{DISTAL-Object}
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 \alias{MD}
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+\alias{DISTAL-Object}
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 \alias{UP}
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+\alias{DISTAL-Object}
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 \alias{DOWN}
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 \title{DISTAL object class constructor}
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 \usage{
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@@ -4,6 +4,7 @@
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 \name{extend}
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 \alias{extend}
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 \alias{extend,GMQLDataset-method}
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+\alias{extend}
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 \alias{extend-method}
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 \title{Method extend}
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 \usage{
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@@ -4,8 +4,8 @@
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 \alias{init_gmql}
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 \title{Init GMQL server}
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 \usage{
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-init_gmql(output_format = "GTF", remote_processing = FALSE,
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-  url = NULL, username = NULL, password = NULL)
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+init_gmql(output_format = "GTF", remote_processing = FALSE, url = NULL,
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+  username = NULL, password = NULL)
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 }
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 \arguments{
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 \item{output_format}{string that identifies the output format of all sample 
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@@ -4,13 +4,13 @@
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 \name{map}
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 \alias{map}
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 \alias{map,GMQLDataset-method}
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+\alias{map}
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 \alias{map-method}
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 \title{Method map}
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 \usage{
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 map(x, y, ...)
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-\S4method{map}{GMQLDataset}(x, y, ..., joinBy = conds(),
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-  count_name = "")
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+\S4method{map}{GMQLDataset}(x, y, ..., joinBy = conds(), count_name = "")
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 }
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 \arguments{
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 \item{x}{GMQLDataset class object}
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@@ -6,9 +6,8 @@
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 \alias{merge,GMQLDataset,GMQLDataset-method}
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 \title{Method merge}
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 \usage{
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-\S4method{merge}{GMQLDataset,GMQLDataset}(x, y,
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-  genometric_predicate = NULL, region_output = "CAT",
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-  joinBy = conds(), reg_attr = c(""))
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+\S4method{merge}{GMQLDataset,GMQLDataset}(x, y, genometric_predicate = NULL,
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+  region_output = "CAT", joinBy = conds(), reg_attr = c(""))
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 }
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 \arguments{
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 \item{x}{GMQLDataset class object}
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@@ -3,7 +3,9 @@
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 \name{OPERATOR-Object}
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 \alias{OPERATOR-Object}
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 \alias{META}
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+\alias{OPERATOR-Object}
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 \alias{NIL}
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+\alias{OPERATOR-Object}
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 \alias{SQRT}
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 \title{OPERATOR object class constructor}
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 \usage{
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@@ -3,6 +3,7 @@
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 \name{Ordering-Functions}
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 \alias{Ordering-Functions}
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 \alias{DESC}
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+\alias{Ordering-Functions}
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 \alias{ASC}
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 \title{Ordering functions}
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 \usage{
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@@ -2,6 +2,7 @@
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 % Please edit documentation in R/gmql_read.R
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 \name{read_gmql}
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 \alias{read_gmql}
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+\alias{read_gmql}
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 \alias{read_GRangesList}
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 \title{Function read}
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 \usage{
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@@ -2,6 +2,7 @@
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 % Please edit documentation in R/web-services.R
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 \name{run_query}
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 \alias{run_query}
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+\alias{run_query}
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 \alias{run_query_fromfile}
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 \title{Run a GMQL query}
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 \usage{
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@@ -4,6 +4,7 @@
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 \name{take}
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 \alias{take}
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 \alias{take,GMQLDataset-method}
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+\alias{take}
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 \alias{take-method}
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 \title{Method take}
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 \usage{