# Generated by roxygen2: do not edit by hand
 

 export(AddToGroup)
 export(RemoveFromGroup)

 export(addAnnotationText)

 export(addCyEdges)
 export(addCyNodes)
 export(analyzeNetwork)
 export(applyFilter)
 export(bundleEdges)
 export(checkNotebookIsRunning)
 export(checkRunningRemote)
 export(clearEdgeBends)
 export(clearEdgePropertyBypass)
 export(clearNetworkCenterBypass)
 export(clearNetworkPropertyBypass)
 export(clearNetworkZoomBypass)
 export(clearNodeOpacityBypass)
 export(clearNodePropertyBypass)
 export(clearSelection)
 export(cloneNetwork)
 export(closeSession)
 export(collapseGroup)
 export(commandEcho)
 export(commandOpenDialog)
 export(commandPause)
 export(commandQuit)
 export(commandRunFile)
 export(commandSleep)
 export(commandsAPI)
 export(commandsGET)
 export(commandsHelp)
 export(commandsPOST)
 export(commandsRun)
 export(copyVisualStyle)
 export(createColumnFilter)
 export(createCompositeFilter)
 export(createDegreeFilter)
 export(createGraphFromNetwork)
 export(createGroup)
 export(createGroupByColumn)
 export(createIgraphFromNetwork)
 export(createNetworkFromDataFrames)
 export(createNetworkFromGraph)
 export(createNetworkFromIgraph)
 export(createSubnetwork)
 export(createVisualStyle)
 export(cybrowserClose)
 export(cybrowserDialog)
 export(cybrowserHide)
 export(cybrowserList)
 export(cybrowserSend)
 export(cybrowserShow)
 export(cybrowserVersion)
 export(cyrestAPI)
 export(cyrestDELETE)
 export(cyrestGET)
 export(cyrestPOST)
 export(cyrestPUT)
 export(cytoscapeApiVersions)
 export(cytoscapeFreeMemory)
 export(cytoscapeMemoryStatus)
 export(cytoscapeNumberOfCores)
 export(cytoscapePing)
 export(cytoscapeVersionInfo)
 export(deleteAllNetworks)

 export(deleteAnnotation)

 export(deleteDuplicateEdges)
 export(deleteGroup)
 export(deleteNetwork)
 export(deleteSelectedEdges)
 export(deleteSelectedNodes)
 export(deleteSelfLoops)
 export(deleteStyleMapping)
 export(deleteTableColumn)
 export(deleteVisualStyle)
 export(diffusionAdvanced)
 export(diffusionBasic)
 export(disableApp)
 export(doInitializeSandbox)
 export(doRequestRemote)
 export(doSetSandbox)
 export(dockPanel)
 export(enableApp)
 export(expandGroup)
 export(exportFilters)
 export(exportImage)
 export(exportNetwork)
 export(exportNetworkToNDEx)
 export(exportVisualStyles)
 export(findRemoteCytoscape)
 export(fitContent)
 export(floatPanel)
 export(getAbsSandboxPath)
 export(getAllEdges)
 export(getAllNodes)

 export(getAllStyleMappings)

 export(getAnnotationList)

 export(getAppInformation)
 export(getAppStatus)
 export(getAppUpdates)
 export(getArrowShapes)
 export(getAvailableApps)
 export(getBackgroundColorDefault)
 export(getBrowserClientChannel)
 export(getBrowserClientJs)
 export(getCollectionList)
 export(getCollectionName)
 export(getCollectionNetworks)
 export(getCollectionSuid)
 export(getCurrentSandbox)
 export(getCurrentSandboxName)
 export(getCurrentSandboxPath)
 export(getCurrentStyle)
 export(getDefaultSandbox)
 export(getDefaultSandboxPath)
 export(getDisabledApps)
 export(getEdgeColor)
 export(getEdgeCount)
 export(getEdgeInfo)
 export(getEdgeLineStyle)
 export(getEdgeLineWidth)
 export(getEdgeProperty)
 export(getEdgeSelectionColorDefault)
 export(getEdgeTargetArrowShape)
 export(getFilterList)
 export(getFirstNeighbors)
 export(getGroupInfo)
 export(getInstalledApps)
 export(getJupyterBridgeURL)
 export(getLayoutNameMapping)
 export(getLayoutNames)
 export(getLayoutPropertyNames)
 export(getLayoutPropertyType)
 export(getLayoutPropertyValue)
 export(getLineStyles)
 export(getNetworkCenter)
 export(getNetworkCount)
 export(getNetworkList)
 export(getNetworkNDExId)
 export(getNetworkName)
 export(getNetworkProperty)
 export(getNetworkSuid)
 export(getNetworkViewSuid)
 export(getNetworkViews)
 export(getNetworkZoom)
 export(getNodeColor)
 export(getNodeCount)
 export(getNodeHeight)
 export(getNodePosition)
 export(getNodeProperty)
 export(getNodeSelectionColorDefault)
 export(getNodeShapes)
 export(getNodeSize)
 export(getNodeWidth)
 export(getNotebookIsRunning)
 export(getSandboxReinitialize)
 export(getSelectedEdgeCount)
 export(getSelectedEdges)
 export(getSelectedNodeCount)
 export(getSelectedNodes)
 export(getStyleDependencies)

 export(getStyleMapping)

 export(getTableColumnNames)
 export(getTableColumnTypes)
 export(getTableColumns)
 export(getTableValue)
 export(getUninstalledApps)
 export(getVisualPropertyDefault)
 export(getVisualPropertyNames)
 export(getVisualStyleNames)
 export(hideAllPanels)
 export(hideEdges)
 export(hideNodes)
 export(hidePanel)
 export(hideSelectedEdges)
 export(hideSelectedNodes)
 export(importFilters)
 export(importNetworkFromFile)
 export(importNetworkFromNDEx)
 export(importVisualStyles)
 export(installApp)
 export(invertEdgeSelection)
 export(invertNodeSelection)
 export(layoutCopycat)
 export(layoutNetwork)
 export(listGroups)
 export(loadTableData)
 export(lockNodeDimensions)
 export(makeSimpleGraph)
 export(makeSimpleIgraph)
 export(mapTableColumn)
 export(mapVisualProperty)
 export(matchArrowColorToEdge)
 export(mergeNetworks)
 export(openAppStore)
 export(openSession)

 export(paletteColorBrewerAccent)
 export(paletteColorBrewerBlues)
 export(paletteColorBrewerBrBG)
 export(paletteColorBrewerBuGn)
 export(paletteColorBrewerBuPu)
 export(paletteColorBrewerDark2)
 export(paletteColorBrewerGnBu)
 export(paletteColorBrewerGreens)
 export(paletteColorBrewerGreys)
 export(paletteColorBrewerOrRd)
 export(paletteColorBrewerOranges)
 export(paletteColorBrewerPRGn)
 export(paletteColorBrewerPaired)
 export(paletteColorBrewerPastel1)
 export(paletteColorBrewerPastel2)
 export(paletteColorBrewerPiYG)
 export(paletteColorBrewerPuBu)
 export(paletteColorBrewerPuBuGn)
 export(paletteColorBrewerPuOr)
 export(paletteColorBrewerPuRd)
 export(paletteColorBrewerPurples)
 export(paletteColorBrewerRdBu)
 export(paletteColorBrewerRdPu)
 export(paletteColorBrewerRdYlBu)
 export(paletteColorBrewerReds)
 export(paletteColorBrewerSet1)
 export(paletteColorBrewerSet2)
 export(paletteColorBrewerSet3)
 export(paletteColorBrewerYlGn)
 export(paletteColorBrewerYlGnBu)
 export(paletteColorBrewerYlOrBr)
 export(paletteColorBrewerYlOrRd)
 export(paletteColorRandom)

 export(removeNodeCustomGraphics)
 export(renameNetwork)
 export(renameTableColumn)
 export(resetDefaultSandbox)
 export(runningRemoteCheck)
 export(sandboxGetFileInfo)
 export(sandboxGetFrom)
 export(sandboxInitializer)
 export(sandboxRemove)
 export(sandboxRemoveFile)
 export(sandboxSendTo)
 export(sandboxSet)
 export(sandboxUrlTo)
 export(saveSession)
 export(selectAllEdges)
 export(selectAllNodes)
 export(selectEdges)
 export(selectEdgesAdjacentToSelectedNodes)
 export(selectEdgesConnectingSelectedNodes)
 export(selectFirstNeighbors)
 export(selectNodes)
 export(selectNodesConnectedBySelectedEdges)
 export(setBackgroundColorDefault)
 export(setCatchupFilterSecs)
 export(setCatchupNetworkSecs)
 export(setCurrentNetwork)
 export(setCurrentSandbox)
 export(setCurrentView)
 export(setDefaultSandbox)
 export(setDefaultSandboxPath)
 export(setEdgeColorBypass)
 export(setEdgeColorDefault)
 export(setEdgeColorMapping)
 export(setEdgeFontFaceBypass)
 export(setEdgeFontFaceDefault)
 export(setEdgeFontFaceMapping)
 export(setEdgeFontSizeBypass)
 export(setEdgeFontSizeDefault)
 export(setEdgeFontSizeMapping)
 export(setEdgeLabelBypass)
 export(setEdgeLabelColorBypass)
 export(setEdgeLabelColorDefault)
 export(setEdgeLabelColorMapping)
 export(setEdgeLabelDefault)
 export(setEdgeLabelMapping)
 export(setEdgeLabelOpacityBypass)
 export(setEdgeLabelOpacityDefault)
 export(setEdgeLabelOpacityMapping)
 export(setEdgeLineStyleBypass)
 export(setEdgeLineStyleDefault)
 export(setEdgeLineStyleMapping)
 export(setEdgeLineWidthBypass)
 export(setEdgeLineWidthDefault)
 export(setEdgeLineWidthMapping)
 export(setEdgeOpacityBypass)
 export(setEdgeOpacityDefault)
 export(setEdgeOpacityMapping)
 export(setEdgePropertyBypass)
 export(setEdgeSelectionColorDefault)
 export(setEdgeSourceArrowColorBypass)
 export(setEdgeSourceArrowColorDefault)
 export(setEdgeSourceArrowColorMapping)
 export(setEdgeSourceArrowMapping)
 export(setEdgeSourceArrowShapeBypass)
 export(setEdgeSourceArrowShapeDefault)
 export(setEdgeSourceArrowShapeMapping)
 export(setEdgeTargetArrowColorBypass)
 export(setEdgeTargetArrowColorDefault)
 export(setEdgeTargetArrowColorMapping)
 export(setEdgeTargetArrowMapping)
 export(setEdgeTargetArrowShapeBypass)
 export(setEdgeTargetArrowShapeDefault)
 export(setEdgeTargetArrowShapeMapping)
 export(setEdgeTooltipBypass)
 export(setEdgeTooltipDefault)
 export(setEdgeTooltipMapping)
 export(setLayoutProperties)
 export(setModelPropagationSecs)
 export(setNetworkCenterBypass)
 export(setNetworkPropertyBypass)
 export(setNetworkZoomBypass)
 export(setNodeBorderColorBypass)
 export(setNodeBorderColorDefault)
 export(setNodeBorderColorMapping)
 export(setNodeBorderOpacityBypass)
 export(setNodeBorderOpacityDefault)
 export(setNodeBorderOpacityMapping)
 export(setNodeBorderWidthBypass)
 export(setNodeBorderWidthDefault)
 export(setNodeBorderWidthMapping)
 export(setNodeColorBypass)
 export(setNodeColorDefault)
 export(setNodeColorMapping)
 export(setNodeComboOpacityMapping)
 export(setNodeCustomBarChart)
 export(setNodeCustomBoxChart)
 export(setNodeCustomHeatMapChart)
 export(setNodeCustomLineChart)
 export(setNodeCustomLinearGradient)
 export(setNodeCustomPieChart)
 export(setNodeCustomPosition)
 export(setNodeCustomRadialGradient)
 export(setNodeCustomRingChart)
 export(setNodeFillOpacityBypass)
 export(setNodeFillOpacityDefault)
 export(setNodeFillOpacityMapping)
 export(setNodeFontFaceBypass)
 export(setNodeFontFaceDefault)
 export(setNodeFontFaceMapping)
 export(setNodeFontSizeBypass)
 export(setNodeFontSizeDefault)
 export(setNodeFontSizeMapping)
 export(setNodeHeightBypass)
 export(setNodeHeightDefault)
 export(setNodeHeightMapping)
 export(setNodeLabelBypass)
 export(setNodeLabelColorBypass)
 export(setNodeLabelColorDefault)
 export(setNodeLabelColorMapping)
 export(setNodeLabelDefault)
 export(setNodeLabelMapping)
 export(setNodeLabelOpacityBypass)
 export(setNodeLabelOpacityDefault)
 export(setNodeLabelOpacityMapping)
 export(setNodeOpacityBypass)
 export(setNodePropertyBypass)
 export(setNodeSelectionColorDefault)
 export(setNodeShapeBypass)
 export(setNodeShapeDefault)
 export(setNodeShapeMapping)
 export(setNodeSizeBypass)
 export(setNodeSizeDefault)
 export(setNodeSizeMapping)
 export(setNodeTooltipBypass)
 export(setNodeTooltipDefault)
 export(setNodeTooltipMapping)
 export(setNodeWidthBypass)
 export(setNodeWidthDefault)
 export(setNodeWidthMapping)
 export(setNotebookIsRunning)
 export(setSandboxReinitialize)
 export(setStyleDependencies)
 export(setVisualPropertyDefault)
 export(setVisualStyle)
 export(syncNodeCustomGraphicsSize)
 export(toggleGraphicsDetails)
 export(unhideAll)
 export(unhideEdges)
 export(unhideNodes)
 export(uninstallApp)
 export(updateApp)
 export(updateNetworkInNDEx)
 export(updateStyleDefaults)
 export(updateStyleMapping)
 exportClasses(spoofResponse)

 import(IRkernel)

 import(RCurl)

 import(RJSONIO)

 import(base64enc)

 import(glue)

 import(httr)

 import(uchardet)

 importFrom(BiocGenerics,cbind)
 importFrom(BiocGenerics,colnames)
 importFrom(BiocGenerics,do.call)

 importFrom(BiocGenerics,setdiff)

 importFrom(R.utils,isAbsolutePath)

 importFrom(RColorBrewer,brewer.pal)

 importFrom(RJSONIO,fromJSON)

 importFrom(RJSONIO,isValidJSON)

 importFrom(RJSONIO,toJSON)
 importFrom(XML,htmlParse)

 importFrom(XML,xmlValue)

 importFrom(XML,xpathSApply)

 importFrom(base64url,base64_urlencode)

 importFrom(dplR,uuid.gen)

 importFrom(glue,glue)

 importFrom(graph,addEdge)
 importFrom(graph,addNode)
 importFrom(graph,edgeData)
 importFrom(graph,edgeDataDefaults)
 importFrom(graph,nodeData)
 importFrom(graph,nodeDataDefaults)

 importFrom(httr,DELETE)
 importFrom(httr,GET)
 importFrom(httr,POST)
 importFrom(httr,PUT)

 importFrom(httr,content)

 importFrom(httr,content_type_json)
 importFrom(igraph,as_data_frame)
 importFrom(igraph,graph_from_data_frame)

 importFrom(igraph,igraph.from.graphNEL)
 importFrom(igraph,igraph.to.graphNEL)

 importFrom(igraph,make_graph)
 importFrom(igraph,set.edge.attribute)
 importFrom(igraph,set.vertex.attribute)

 importFrom(methods,is)

 importFrom(methods,new)

 importFrom(stats,na.omit)

 importFrom(stats,setNames)

 importFrom(utils,URLencode)
 importFrom(utils,browseURL)

 importFrom(utils,file_test)

 importFrom(utils,head)
 importFrom(utils,tail)