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  • ea470d8 (HEAD -> master, origin/master, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 10:36:11 -0400;
  • e698db8 (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 10:36:11 -0400;
  • 0fec035 bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 14:55:17 +0000;
  • a86f310 (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 14:55:17 +0000;
  • f2a58ce bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 15:46:20 +0000;
  • 9cfd5fd (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 15:46:19 +0000;
  • 8b27a02 bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 15:33:37 +0000;
  • 9433738 (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 15:33:37 +0000;
  • a95f0e0 bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 10:22:59 -0400;
  • bf0c111 (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 10:22:59 -0400;
  • bc38dcb bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:08:52 +0000;
  • 2f5aeaf (origin/RELEASE_3_11, RELEASE_3_11) bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:08:52 +0000;
  • de27c3f Merge branch 'RELEASE_3_10' by Martin Morgan <martin.morgan@roswellpark.org> 2019-10-30 16:27:29 -0400;
  • 1615f29 (origin/RELEASE_3_10) LinkingTo: is sufficient to discover BH include directory by Martin Morgan <martin.morgan@roswellpark.org> 2019-10-30 16:23:21 -0400;
  • c502fff bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:34:32 -0400;
  • 4f458e9 bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:07:25 -0400;
  • fb29b35 Merge branch 'HenrikBengtsson-master' by Kayla-Morrell <Kayla.Morrell@roswellpark.org> 2019-09-05 14:04:17 -0400;
  • 9e34efd BUG FIX: Package fails to install with _R_CHECK_LENGTH_1_CONDITION_=true by Henrik Bengtsson <hb@aroma-project.org> 2019-09-04 18:56:39 -0700;
  • b3accfd bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 12:10:32 -0400;
  • ef24c17 (origin/RELEASE_3_9, RELEASE_3_9) bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 11:53:02 -0400;
  • a1a7a27 Template comparator instantiated from BGL template instead of hard-coded by Ubuntu <ubuntu@ip-172-31-43-131.ec2.internal> 2019-04-25 14:36:19 +0000;
  • 4742c70 Added space mandatory between consecutive close angle brackets by Samuela Pollack <spollack@jimmy.harvard.edu> 2019-04-24 15:33:06 -0400;
  • 90711f5 Better kludge for max_element thing using explicit template specialization by Ubuntu <ubuntu@ip-172-31-43-131.ec2.internal> 2019-04-24 19:09:04 +0000;
  • 69d3f1a Temporary kludge to allow bbc to run with concept check enabled by Ubuntu <ubuntu@ip-172-31-43-131.ec2.internal> 2019-04-23 15:21:03 +0000;
  • e083442 Temporary kludge to allow bbc to run with concept checking enabled by Ubuntu <ubuntu@ip-172-31-43-131.ec2.internal> 2019-04-23 15:09:46 +0000;
  • c16aa45 Register signal handler to prevent crashing R on abort by Ubuntu <ubuntu@ip-172-31-87-253.ec2.internal> 2019-03-28 20:31:49 +0000;
  • 35ca8b4 Fixed missing quotes in configure.ac by Samuela Pollack <spollack@jimmy.harvard.edu> 2019-03-25 15:52:49 -0400;
  • 279b760 Increment version number by Samuela Pollack <spollack@jimmy.harvard.edu> 2019-03-25 15:03:46 -0400;
  • f728e70 Hack configure.ac to prevent warning message in environment variable by Samuela Pollack <sampoll@users.noreply.github.com> 2019-03-25 14:45:40 -0400;
  • 3cffd6d Explicit path to R in configure file by Samuela Pollack <sampoll@users.noreply.github.com> 2019-03-25 12:59:11 -0400;
  • 086ad0c (origin/RELEASE_3_8, RELEASE_3_8) Temporarily removing betweenness clustering to prevent compile error in llvm c++ lib by Ubuntu <ubuntu@ip-172-31-87-253.ec2.internal> 2019-03-22 17:03:55 +0000;
  • 0272416 Removing obsolete Windows config file by Samuela Pollack <spollack@jimmy.harvard.edu> 2019-03-22 11:28:39 -0400;
  • 77a9073 Modifications to .Rd and .Rnw to remove warnings during check by Ubuntu <ubuntu@ip-172-31-87-253.ec2.internal> 2019-03-22 15:02:44 +0000;
  • f13711c Updated configure file for hidden source file by Ubuntu <ubuntu@ip-172-31-87-253.ec2.internal> 2019-03-22 13:22:54 +0000;
  • d61ed70 Temporarily removed function which prevents compilation with LLVM C++ library by Ubuntu <ubuntu@ip-172-31-87-253.ec2.internal> 2019-03-13 20:19:58 +0000;
  • 8f152f5 Removed uncalled macro from configure.ac and updated cleanup script by Samuela Pollack <sampoll@users.noreply.github.com> 2019-02-20 14:23:23 -0500;
  • 1d76c84 Fixed error in error message by Samuela Pollack <spollack@jimmy.harvard.edu> 2019-02-12 18:55:20 -0500;
  • 3617218 Modify Makevars.in to substitute kludge for 'abort' by Samuela Pollack <spollack@jimmy.harvard.edu> 2019-02-12 16:45:34 -0500;
  • 592221a Adding M4 macro to check for presence of BH package by Samuela Pollack <spollack@jimmy.harvard.edu> 2019-02-12 16:22:05 -0500;
  • 6411dd0 Kludge to eliminate warning from boost call to 'abort' by Samuela Pollack <spollack@jimmy.harvard.edu> 2019-02-12 16:20:09 -0500;
  • bb43c52 Removed unused tarball and build product configure script by Samuela Pollack <spollack@jimmy.harvard.edu> 2018-12-19 06:09:33 -0500;
  • 64ef807 Link to headers in installed package CRAN BH by Samuela Pollack <spollack@jimmy.harvard.edu> 2018-12-19 06:08:17 -0500;
  • 3cc60ec avoid Rdefines by Martin Morgan <martin.morgan@roswellpark.org> 2018-11-19 05:52:02 -0500;
  • eea6d2a version bump by Martin Morgan <martin.morgan@roswellpark.org> 2018-11-19 15:49:54 -0500;
  • c4242e4 avoid Rdefines by Martin Morgan <martin.morgan@roswellpark.org> 2018-11-19 05:52:02 -0500;
  • e681708 bump x.y.z versions to odd y after creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:54:26 -0400;
  • 5533868 bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:41:41 -0400;
  • 3d69f49 bump x.y.z versions to odd y after creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:41:36 -0400;
  • a1fa9d8 (origin/RELEASE_3_7, RELEASE_3_7) bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:34:58 -0400;
  • c2a22f7 repair edmondsOptimumBranching with new hpp files from atofigh address most BiocCheck issues except for registration of C++ routines by Vince Carey <stvjc@channing.harvard.edu> 2018-02-25 11:39:43 -0500;
  • 6c495dc bump x.y.z versions to odd y after creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:52:04 -0400;
  • e9c743d (origin/RELEASE_3_6, RELEASE_3_6) bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:38:52 -0400;
  • 8054946 bump x.y.z versions to odd y after creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:50:57 +0000;
  • 93e8fcf (origin/RELEASE_3_5, RELEASE_3_5) Creating branch for BioC 3.5 release by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:45:44 +0000;
  • 21bd225 bump x.y.z versions to even y prior to creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:25:24 +0000;
  • f7f0b78 bump x.y.z versions to odd 'y' after creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:10:43 +0000;
  • 16c682a (origin/RELEASE_3_4, RELEASE_3_4) Creating branch for BioC 3.4 release by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:00:47 +0000;
  • 71e117e bump x.y.z versions to even 'y' prior to creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 18:45:06 +0000;
  • 23612c4 avoid collisions with protect, etc by Martin Morgan <mtmorgan@fhcrc.org> 2016-08-10 21:16:54 +0000;
  • ef4b64e passes check with a warning on presence of abort() in the code of some boost functions.... by Vince Carey <stvjc@channing.harvard.edu> 2016-08-10 20:36:07 +0000;
  • 73870c0 (origin/RELEASE_3_3, RELEASE_3_3) port 117546 by Martin Morgan <mtmorgan@fhcrc.org> 2016-05-16 22:08:23 +0000;
  • 36438b7 include local boost library ahead of system by Martin Morgan <mtmorgan@fhcrc.org> 2016-05-16 22:05:31 +0000;
  • 9495d63 bump version after creating 3.3 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:30:44 +0000;
  • 44c8d5f Creating branch for BioC 3.3 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:26:31 +0000;
  • 8bdbb78 Bump versions prior to creation of 3.3 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:20:18 +0000;
  • 7a8073b Bumped version number of all packages after creation of 3.2 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:59:53 +0000;
  • 11cc994 (origin/RELEASE_3_2, RELEASE_3_2) Creating branch for BioC 3.2 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:57:33 +0000;
  • abb28d1 Bumped versions of all packages prior to creating 3.2 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:36:05 +0000;
  • 8b5efbe documentation update by Martin Morgan <mtmorgan@fhcrc.org> 2015-05-12 22:43:53 +0000;
  • 4111c7c Bump versions in trunk after creation of 3.1 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-04-16 20:02:44 +0000;
  • 5be55e0 (origin/RELEASE_3_1, RELEASE_3_1) Creating branch for BioC 3.1 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-04-16 20:00:01 +0000;
  • f15fed2 Bump versions prior to creating 3.1 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-04-16 19:42:01 +0000;
  • 04a04ea Bumping versions after creating 3.0 release branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-10-13 21:47:41 +0000;
  • 179863b (origin/RELEASE_3_0) Creating branch for BioC 3.0 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-10-13 21:46:02 +0000;
  • eb3b4ae Bump package versions prior to creating the 3.0 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-10-13 21:38:33 +0000;
  • 1372bc6 (origin/RELEASE_2_14, RELEASE_2_14) backport r93337 by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-08-18 18:54:42 +0000;
  • d2b6cac fix for std::set iterator invalidation after erase() by Nathaniel Hayden <nhayden@fhcrc.org> 2014-08-13 00:30:04 +0000;
  • d923656 add a unit test by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-08-12 19:09:35 +0000;
  • e2039a0 Second version bump after creating 2.14 release branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-04-11 21:21:21 +0000;
  • 7abd9f0 Creating 2.14 release branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-04-11 21:17:46 +0000;
  • 5d1aaa4 First version bump prior to creating 2.14 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-04-11 21:07:21 +0000;
  • 913d46b modify to new biocViews to DESCRIPTION file by Sonali Arora <sarora@fhcrc.org> 2014-03-04 22:12:21 +0000;
  • ecc8531 Rename inst/doc to vignettes and bump version for all packages maintained by BioC core which are in the manifest and have not already done this. by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-10-25 21:19:52 +0000;
  • f5a5ecb bump version after release branch has been created by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-10-14 21:47:19 +0000;
  • 27d29c0 (origin/RELEASE_2_13, RELEASE_2_13) Creating branch for BioC 2.13 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-10-14 21:43:43 +0000;
  • cff751b bump versions prior to creating BioC 2.13 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-10-14 21:29:21 +0000;
  • 7b6830a (origin/RELEASE_2_12, RELEASE_2_12) Backporting Vince's fix (r75915) from trunk: by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-04-23 17:40:27 +0000;
  • 07dd15b first attempt at resolving intermittent errors related to incremental components, seems to be simple variable reference error by Vince Carey <stvjc@channing.harvard.edu> 2013-04-23 03:25:58 +0000;
  • e28bc4e (origin/RELEASE_2_11, RELEASE_2_11) work around scope issue in clang 3.1 by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-04-22 21:40:39 +0000;
  • a95c21a work around scope issue in clang 3.1 by Martin Morgan <mtmorgan@fhcrc.org> 2013-04-22 21:35:29 +0000;
  • 4595f90 work around scope issue in clang 3.1 by Martin Morgan <mtmorgan@fhcrc.org> 2013-04-22 21:28:09 +0000;
  • d87fa9d Bump y in version x.y.z to odd number in devel by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-04-03 22:06:11 +0000;
  • 7d678ed Creating branch for BioC 2.12 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-04-03 21:56:22 +0000;
  • 2e76719 bump y of x.y.z version number for BioC 2.12 release by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-04-03 21:32:27 +0000;
  • e24041a bump package versions after creating 2.11 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2012-10-01 22:43:56 +0000;
  • b120785 Creating branch for BioC 2.11 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2012-10-01 22:37:11 +0000;
  • 4d49f18 Bump all packages before creating 2.11 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2012-10-01 22:16:24 +0000;
  • 601434c added some args to maxClique to allow direct supply of nodes and edgeMatrix by Vince Carey <stvjc@channing.harvard.edu> 2012-09-12 03:35:40 +0000;
  • d6ed703 (origin/RELEASE_2_10) dealing with layout doc upon removal by Vince Carey <stvjc@channing.harvard.edu> 2012-06-19 12:56:24 +0000;
  • eff0021 changes to vignette in light of layout removal by Vince Carey <stvjc@channing.harvard.edu> 2012-06-19 12:44:32 +0000;