Browse code

Revision Redo2

Pourya Naderi authored on 07/01/2022 22:58:10
Showing 2 changed files

... ...
@@ -1,6 +1,6 @@
1 1
 Package: PanomiR
2 2
 Title: Inferring miRNAs targeting of pathway groups
3
-Version: 0.99.3
3
+Version: 0.99.4
4 4
 Authors@R: c(
5 5
     person("Pourya", "Naderi", email = "pouryany@gmail.com",
6 6
            role = c("aut", "cre")),
... ...
@@ -298,12 +298,11 @@ own customized pathway-gene association table. This customized can then
298 298
 replaced `path_gene_table` input in functions described in sections 1,2, and 5
299 299
 of this manual.
300 300
 
301
-```{r customized_gsc}
301
+```{r customized_gsc, eval= FALSE}
302 302
 data("gscExample")
303 303
 
304
-newPathGeneTable <-tableFromGSC(gscExample)
304
+newPathGeneTable <-tableFromGSC(gscExample, fromType = NULL)
305 305
 
306
-head(newPathGeneTable)
307 306
 ```
308 307
 
309 308
 The the pathway correlation network in section 3 is build upon an MSigDB V6.2,