| 0fee7e4d |
Package: PanomiR
|
| 039b0f80 |
Title: Detection of miRNAs that regulate interacting groups of pathways
|
| f1c15ea9 |
Version: 1.0.2
|
| a80b31dc |
Authors@R: c(
|
| 0fee7e4d |
person("Pourya", "Naderi", email = "pouryany@gmail.com",
|
| a80b31dc |
role = c("aut", "cre")),
|
| ed343dba |
person("Yue Yang (Alan)", "Teo", email = "yueyang.teo@epfl.ch",
|
| a80b31dc |
role = c("aut")),
person("Ilya", "Sytchev", email = "isytchev@hsph.harvard.edu",
|
| ed343dba |
role = c("aut")),
person("Winston", "Hide", email = "whide@bidmc.harvard.edu",
|
| a80b31dc |
role = c("aut")))
|
| 0fee7e4d |
Description: PanomiR is a package to detect miRNAs that target groups of
|
| 389ff364 |
pathways from gene expression data. This package provides functionality
for generating pathway activity profiles, determining differentially
activated pathways between user-specified conditions, determining
|
| 039b0f80 |
clusters of pathways via the PCxN package, and generating miRNAs targeting
clusters of pathways. These function can be used separately or sequentially
to analyze RNA-Seq data.
|
| 0fee7e4d |
License: MIT + file LICENSE
Encoding: UTF-8
|
| 35d410e6 |
RoxygenNote: 7.1.2
|
| 3bfd0c1f |
Suggests:
|
| 3cb740b2 |
testthat (>= 3.0.0),
|
| ed343dba |
BiocStyle,
|
| 3cb740b2 |
knitr,
|
| 9af8d01f |
rmarkdown
|
| 6b632bba |
Config/testthat/edition: 3
|
| 5c2039f1 |
biocViews: GeneExpression, GeneSetEnrichment, GeneTarget, miRNA, Pathways
|
| 3bfd0c1f |
Imports:
|
| e691f7e1 |
clusterProfiler,
|
| 70576525 |
dplyr,
|
| 3867d0db |
forcats,
|
| a80b31dc |
GSEABase,
|
| 70576525 |
igraph,
limma,
|
| 3d57f510 |
metap,
|
| 70576525 |
org.Hs.eg.db,
parallel,
preprocessCore,
RColorBrewer,
|
| e52ccb89 |
rlang,
tibble,
|
| d1068d4b |
withr,
|
| e52ccb89 |
utils
|
| 3bfd0c1f |
Depends:
|
| af78a2a3 |
R (>= 4.2.0)
|
| 9af8d01f |
URL: https://github.com/pouryany/PanomiR
BugReports: https://github.com/pouryany/PanomiR/issues
|
| 3cb740b2 |
VignetteBuilder: knitr
|
