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  • 259d92a (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 11:38:30 -0400;
  • 58bfc21 (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 11:38:30 -0400;
  • deaa067 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:27:07 -0400;
  • 3b05719 (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:27:07 -0400;
  • bc594ff version bump by Luca Anholt <la1317@ic.ac.uk> 2022-04-09 16:25:35 +0100;
  • 218b103 fixing description by Luca Anholt <la1317@ic.ac.uk> 2022-04-09 16:07:37 +0100;
  • dcc5586 fixing bioconductor bioccheck notes by Luca Anholt <la1317@ic.ac.uk> 2022-04-09 16:05:47 +0100;
  • c259df7 version bump by Luca Anholt <la1317@ic.ac.uk> 2022-04-09 15:29:51 +0100;
  • 49b1de5 Merge remote-tracking branch 'upstream/master' by Luca Anholt <la1317@ic.ac.uk> 2022-04-09 15:28:21 +0100;
  • 0e43206 deprecating KEGG network updating functions by Luca Anholt <la1317@ic.ac.uk> 2022-04-09 15:20:47 +0100;
  • 2809b10 update tests + vignette by Luca Anholt <la1317@ic.ac.uk> 2022-04-09 13:03:20 +0100;
  • 3788725 remove commented use_data by Luca Anholt <la1317@ic.ac.uk> 2022-04-09 12:48:05 +0100;
  • 92edb96 rename function by Luca Anholt <la1317@ic.ac.uk> 2022-04-09 12:47:34 +0100;
  • 079e4f5 update namespace by Luca Anholt <la1317@ic.ac.uk> 2022-04-09 12:47:09 +0100;
  • 85c843d update description by Luca Anholt <la1317@ic.ac.uk> 2022-04-03 22:55:08 +0100;
  • 54c1149 update compression on sysdata.rda by Luca Anholt <la1317@ic.ac.uk> 2022-04-03 22:54:44 +0100;
  • 10f7d53 add return to documentation by Luca Anholt <la1317@ic.ac.uk> 2022-04-03 22:54:29 +0100;
  • 97a306b fix function documentation title by Luca Anholt <la1317@ic.ac.uk> 2022-04-03 22:54:15 +0100;
  • 92773d1 adding line break to example by Luca Anholt <la1317@ic.ac.uk> 2022-04-03 22:53:59 +0100;
  • 7770d42 update man by Luca Anholt <la1317@ic.ac.uk> 2022-04-03 22:53:37 +0100;
  • a8e75bc fix fs dependency path call by Luca Anholt <la1317@ic.ac.uk> 2022-04-03 22:37:30 +0100;
  • dfdb243 new sysdata.rda saving logic + missing argument handling by Luca Anholt <la1317@ic.ac.uk> 2022-04-03 22:31:34 +0100;
  • 04cc854 update man by Luca Anholt <la1317@ic.ac.uk> 2022-04-03 22:30:59 +0100;
  • 3095212 add global variable definitions for unit test by Luca Anholt <la1317@ic.ac.uk> 2022-04-03 22:30:37 +0100;
  • 8829e61 add line breaks to examples by Luca Anholt <la1317@ic.ac.uk> 2022-04-03 22:30:04 +0100;
  • a652841 moving test data documentation by Luca Anholt <la1317@ic.ac.uk> 2022-04-03 22:29:30 +0100;
  • d431366 moving test data by Luca Anholt <la1317@ic.ac.uk> 2022-04-03 22:29:11 +0100;
  • 6cc715e fixing usethis::use_data breaking on R CMD check by Luca Anholt <la1317@ic.ac.uk> 2022-04-03 11:47:09 +0100;
  • 9986256 update namespace by Luca Anholt <la1317@ic.ac.uk> 2022-04-02 17:15:59 +0100;
  • e4ce4d1 add progress bar to function documentation by Luca Anholt <la1317@ic.ac.uk> 2022-04-02 17:15:44 +0100;
  • 2f0626e update man by Luca Anholt <la1317@ic.ac.uk> 2022-04-02 17:15:18 +0100;
  • 23daa4a adding progress bar to tests by Luca Anholt <la1317@ic.ac.uk> 2022-04-02 17:14:57 +0100;
  • dff7a33 updating internal data by Luca Anholt <la1317@ic.ac.uk> 2022-04-02 16:37:51 +0100;
  • ae44dea updating vignette by Luca Anholt <la1317@ic.ac.uk> 2022-04-02 16:37:37 +0100;
  • 2e60e49 adding progress bar options by Luca Anholt <la1317@ic.ac.uk> 2022-04-02 16:37:26 +0100;
  • 82a980c fix internal data overwrite issue by Luca Anholt <la1317@ic.ac.uk> 2022-04-02 16:18:47 +0100;
  • 609607e fix file path for tests by Luca Anholt <la1317@ic.ac.uk> 2022-04-02 16:11:53 +0100;
  • b791e3a fixing append errors by Luca Anholt <la1317@ic.ac.uk> 2022-04-02 16:11:32 +0100;
  • 20e8673 add function example by Luca Anholt <la1317@ic.ac.uk> 2022-04-02 15:40:44 +0100;
  • 636d3e3 update sysdata.rda by Luca Anholt <la1317@ic.ac.uk> 2022-04-02 15:38:55 +0100;
  • 7ffea87 adding unit test for get_KEGG_data.R and unit test data for stability in testing by Luca Anholt <la1317@ic.ac.uk> 2022-04-02 15:38:36 +0100;
  • 2946a64 alter function name to lowercase by Luca Anholt <la1317@ic.ac.uk> 2022-04-02 15:37:47 +0100;
  • af2a3d1 adding error on requesting too many workers by Luca Anholt <la1317@ic.ac.uk> 2022-04-02 15:36:28 +0100;
  • 27674de update decompose imon test by Luca Anholt <la1317@ic.ac.uk> 2022-04-02 14:51:18 +0100;
  • 60877d6 add line breaks to roxygen documentation by Luca Anholt <la1317@ic.ac.uk> 2022-04-02 13:20:17 +0100;
  • 4a86087 update internal data by Luca Anholt <la1317@ic.ac.uk> 2022-04-02 13:18:16 +0100;
  • 4c0d22f improving performance of Get_KEGG_Data.R by Luca Anholt <la1317@ic.ac.uk> 2022-04-02 13:18:02 +0100;
  • 9846508 deleting unused functions by Luca Anholt <la1317@ic.ac.uk> 2022-04-02 13:17:38 +0100;
  • 5ac55f1 putting adjl_G_S to igraph object back into main function, as utils did not work by Luca Anholt <la1317@ic.ac.uk> 2022-04-02 13:02:55 +0100;
  • 07fde6a massively improving performance of getting compound name/id hash by Luca Anholt <la1317@ic.ac.uk> 2022-04-02 13:02:16 +0100;
  • d6b2c46 arrow assignment operators instead of = by Luca Anholt <la1317@ic.ac.uk> 2022-04-02 13:01:54 +0100;
  • c68846b remove progress bar in test by Luca Anholt <la1317@ic.ac.uk> 2022-04-02 13:00:52 +0100;
  • 0da2357 updating man by Luca Anholt <la1317@ic.ac.uk> 2022-03-26 15:44:53 +0000;
  • 7cb1f0c using color rather than col in graph attributes by Luca Anholt <la1317@ic.ac.uk> 2022-03-26 12:36:59 +0000;
  • c5f3425 simplifying setting graph attributes using utils function by Luca Anholt <la1317@ic.ac.uk> 2022-03-26 12:16:06 +0000;
  • 1e631ca removing cat by Luca Anholt <la1317@ic.ac.uk> 2022-03-26 11:57:21 +0000;
  • be89e64 add new utils function for creating KEGG network (avoid code duplication) by Luca Anholt <la1317@ic.ac.uk> 2022-03-26 11:49:12 +0000;
  • d0241bf removing redundant if statement by Luca Anholt <la1317@ic.ac.uk> 2022-03-26 11:20:44 +0000;
  • f004b4f fixing failing tests by Luca Anholt <la1317@ic.ac.uk> 2022-03-26 11:17:20 +0000;
  • 5d4174d replacing supressWarnings with tryCatch by Luca Anholt <la1317@ic.ac.uk> 2022-03-26 11:17:06 +0000;
  • 06dd274 Avoiding redundant 'stop' and 'warn*' in signal conditions by Luca Anholt <la1317@ic.ac.uk> 2022-03-26 10:46:54 +0000;
  • 109f251 Avoid 1:... using seq_along(). by Luca Anholt <la1317@ic.ac.uk> 2022-03-26 10:42:32 +0000;
  • 363f64f using full boolean/logic forms by Luca Anholt <la1317@ic.ac.uk> 2022-03-26 10:41:54 +0000;
  • 1e72049 swapping sapply for vapply by Luca Anholt <la1317@ic.ac.uk> 2022-03-26 09:59:20 +0000;
  • 772c513 removing dontrun from man by Luca Anholt <la1317@ic.ac.uk> 2022-03-26 09:44:41 +0000;
  • 9524d6c remove dontrun examples for internal functions by Luca Anholt <la1317@ic.ac.uk> 2022-03-26 09:34:38 +0000;
  • 607b10a setting global variables to avoid "Undefined global functions or variables" in R CMD by Luca Anholt <la1317@ic.ac.uk> 2022-03-26 09:25:07 +0000;
  • ca4adb6 update man for GWAS_data_reader and er_snp_vector by Luca Anholt <la1317@ic.ac.uk> 2022-03-26 09:17:04 +0000;
  • 6ccfe2f removing unused vignette files by Luca Anholt <la1317@ic.ac.uk> 2022-03-26 08:59:57 +0000;
  • 9ac011a add line where to find download link for GWAS Catalog data by Luca Anholt <la1317@ic.ac.uk> 2022-03-26 08:57:00 +0000;
  • 8116206 fixing GWAS_data_reader.R documentation error by Luca Anholt <la1317@ic.ac.uk> 2022-03-26 08:55:05 +0000;
  • c5b9964 fixing GWAS Central extdata documentation error by Luca Anholt <la1317@ic.ac.uk> 2022-03-26 08:53:23 +0000;
  • 64b1423 adding documentation for inst/extdata by Luca Anholt <la1317@ic.ac.uk> 2022-03-26 08:51:56 +0000;
  • 327e92e adding line breaks to roxygen documentation for internal data by Luca Anholt <la1317@ic.ac.uk> 2022-03-26 08:17:30 +0000;
  • b78c149 removing ExperimentData from BiocType by Luca Anholt <la1317@ic.ac.uk> 2022-03-26 08:11:21 +0000;
  • 84e7a5a updating R version in description file by Luca Anholt <la1317@ic.ac.uk> 2022-03-26 08:10:23 +0000;
  • fcb8168 version bump by Luca Anholt <la1317@ic.ac.uk> 2022-02-20 15:28:44 +0000;
  • 3c75cb0 package version bump by Luca Anholt <la1317@ic.ac.uk> 2022-02-20 15:02:28 +0000;
  • 3a0cd35 bioccheck fixes by Luca Anholt <la1317@ic.ac.uk> 2022-02-20 14:25:30 +0000;
  • a291b99 update gitignore by Luca Anholt <la1317@ic.ac.uk> 2022-02-20 12:26:12 +0000;
  • 86325f4 remove rproj from git tracking by Luca Anholt <la1317@ic.ac.uk> 2022-02-20 12:25:23 +0000;
  • 2d57b6a remove r history by Luca Anholt <la1317@ic.ac.uk> 2022-02-20 12:23:17 +0000;
  • d7a51f0 update gitignore by Luca Anholt <la1317@ic.ac.uk> 2022-02-20 12:20:05 +0000;
  • 5838a00 updating sysdata by Luca Anholt <la1317@ic.ac.uk> 2022-02-20 12:13:52 +0000;
  • 2217dfa r cmd pass fixes by Luca Anholt <la1317@ic.ac.uk> 2022-02-20 11:26:02 +0000;
  • c9854c7 fixing to pass unit tests by Luca Anholt <la1317@ic.ac.uk> 2022-02-19 23:59:57 +0000;
  • 2af960e updating example in roxygen documentation for get_grouped_IMON.R by Luca Anholt <la1317@ic.ac.uk> 2022-02-19 19:03:22 +0000;
  • cab374d deprecating gwas catalog specific function unit test by Luca Anholt <la1317@ic.ac.uk> 2022-02-19 19:01:16 +0000;
  • d2d9a50 changing to examples in get_IMON.R roxygen by Luca Anholt <la1317@ic.ac.uk> 2022-02-19 18:58:03 +0000;
  • d03900d deprecating old gwas catalog specific function by Luca Anholt <la1317@ic.ac.uk> 2022-02-19 18:57:12 +0000;
  • 228229a adding in eval false for gwas central chunk by Luca Anholt <la1317@ic.ac.uk> 2022-02-19 18:56:49 +0000;
  • ef79d3a updating package description by Luca Anholt <la1317@ic.ac.uk> 2022-02-19 18:37:52 +0000;
  • fa7d177 adding vignette section for handling GWAS Central data by Luca Anholt <la1317@ic.ac.uk> 2022-02-19 18:35:14 +0000;
  • efb38ac editing vignette by Luca Anholt <la1317@ic.ac.uk> 2022-02-19 18:03:19 +0000;
  • 0f64440 adding GWAS Central example dataset by Luca Anholt <la1317@ic.ac.uk> 2022-02-19 17:56:06 +0000;
  • 107a163 updating man by Luca Anholt <la1317@ic.ac.uk> 2022-02-19 17:54:18 +0000;
  • 82ffe2a updating namespace by Luca Anholt <la1317@ic.ac.uk> 2022-02-19 17:53:55 +0000;
  • 08c048c removing old GWAS Cat function from export by Luca Anholt <la1317@ic.ac.uk> 2022-02-19 17:36:11 +0000;
  • 517e213 adding examples to GWAS data reader function by Luca Anholt <la1317@ic.ac.uk> 2022-02-19 17:32:41 +0000;
  • 2a53049 adding more generic GWAS data reading function + unit test by Luca Anholt <la1317@ic.ac.uk> 2022-02-19 17:30:10 +0000;