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  • 2bef265 (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 09:49:31 -0400;
  • 49706e2 (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 09:49:31 -0400;
  • 6138311 bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:22:26 -0400;
  • d9de980 (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:22:26 -0400;
  • 8b3b206 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:06:44 -0400;
  • 1364f14 (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:06:44 -0400;
  • a4868e0 bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:10:24 +0000;
  • 29b5fa4 (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:10:24 +0000;
  • 282fd88 bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:02:11 +0000;
  • 55c01b3 (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:02:11 +0000;
  • 6dcdd96 bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 15:51:34 +0000;
  • 02aecc8 (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 15:51:34 +0000;
  • 77ad790 bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 10:44:58 -0400;
  • e862317 (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 10:44:58 -0400;
  • ca6ca83 bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:28:44 +0000;
  • a799f9b (origin/RELEASE_3_11, RELEASE_3_11) bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:28:43 +0000;
  • 6494bf5 Fix C warnings by SRenan <renan.sauteraud@gmail.com> 2019-12-30 12:22:33 -0500;
  • 6c61203 Cleanup for BioC 3.11 by SRenan <renan.sauteraud@gmail.com> 2019-12-27 11:01:40 -0500;
  • 68dab30 Merge upstream by SRenan <renan.sauteraud@gmail.com> 2019-12-16 13:03:46 -0500;
  • 8a664e8 Update NS/DESC by SRenan <renan.sauteraud@gmail.com> 2019-12-16 12:58:24 -0500;
  • e158160 Update maintainer by SRenan <renan.sauteraud@gmail.com> 2019-11-04 10:18:19 -0500;
  • f0c690e bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:36:06 -0400;
  • 36595f1 (origin/RELEASE_3_10, RELEASE_3_10) bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:08:28 -0400;
  • 8ee9352 bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 12:11:10 -0400;
  • 452f807 (origin/RELEASE_3_9, RELEASE_3_9) bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 11:53:35 -0400;
  • e4566a1 bump x.y.z versions to odd y after creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:54:30 -0400;
  • 5b0be17 (origin/RELEASE_3_8, RELEASE_3_8) bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:41:48 -0400;
  • 1c2ca70 bump x.y.z versions to odd y after creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:41:38 -0400;
  • 0f2baf4 (origin/RELEASE_3_7, RELEASE_3_7) bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:35:24 -0400;
  • 7179780 bump x.y.z versions to odd y after creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:52:14 -0400;
  • bb40490 (origin/RELEASE_3_6, RELEASE_3_6) bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:39:38 -0400;
  • 489dce7 bump x.y.z versions to odd y after creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:50:57 +0000;
  • 12df5c8 (origin/RELEASE_3_5, RELEASE_3_5) Creating branch for BioC 3.5 release by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:45:44 +0000;
  • 956b8dc bump x.y.z versions to even y prior to creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:25:24 +0000;
  • 18871c1 bump x.y.z versions to odd 'y' after creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:10:43 +0000;
  • 5dd7e73 (origin/RELEASE_3_4, RELEASE_3_4) Creating branch for BioC 3.4 release by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:00:47 +0000;
  • 11adcbb bump x.y.z versions to even 'y' prior to creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 18:45:06 +0000;
  • 402a24a Summary: format author field correctly by Martin Morgan <mtmorgan@fhcrc.org> 2016-08-25 20:34:23 +0000;
  • 693b771 bump version after creating 3.3 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:30:44 +0000;
  • c68fb10 (origin/RELEASE_3_3, RELEASE_3_3) Creating branch for BioC 3.3 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:26:31 +0000;
  • 2a841bf Bump versions prior to creation of 3.3 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:20:18 +0000;
  • 612ca55 Bumped version number of all packages after creation of 3.2 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:59:53 +0000;
  • eacf072 (origin/RELEASE_3_2, RELEASE_3_2) Creating branch for BioC 3.2 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:57:33 +0000;
  • ccb1523 Bumped versions of all packages prior to creating 3.2 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:36:05 +0000;
  • 6dbe13f Bump versions in trunk after creation of 3.1 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-04-16 20:02:44 +0000;
  • a3a6098 (origin/RELEASE_3_1, RELEASE_3_1) Creating branch for BioC 3.1 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-04-16 20:00:01 +0000;
  • 115586d Bump versions prior to creating 3.1 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-04-16 19:42:01 +0000;
  • f45bc34 NAMESPACE tweaks by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-11-20 20:04:33 +0000;
  • 31fcc94 Bumping versions after creating 3.0 release branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-10-13 21:47:41 +0000;
  • 91d1178 (origin/RELEASE_3_0, RELEASE_3_0) Creating branch for BioC 3.0 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-10-13 21:46:02 +0000;
  • d694caf Bump package versions prior to creating the 3.0 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-10-13 21:38:33 +0000;
  • 5e01cf8 Second version bump after creating 2.14 release branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-04-11 21:21:21 +0000;
  • f17d560 (origin/RELEASE_2_14, RELEASE_2_14) Creating 2.14 release branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-04-11 21:17:46 +0000;
  • 3544c05 First version bump prior to creating 2.14 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-04-11 21:07:21 +0000;
  • ac8a30a modify to new biocViews to DESCRIPTION file by Sonali Arora <sarora@fhcrc.org> 2014-03-04 22:12:21 +0000;
  • 67944bd rename inst/doc to vignettes and bump version by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-11-01 20:23:55 +0000;
  • d753d4d bump version after release branch has been created by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-10-14 21:47:19 +0000;
  • 05b1e03 (origin/RELEASE_2_13, RELEASE_2_13) Creating branch for BioC 2.13 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-10-14 21:43:43 +0000;
  • d8369c1 bump versions prior to creating BioC 2.13 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-10-14 21:29:21 +0000;
  • 53c6997 Added application note in citation by SRenan <renan.sauteraud@gmail.com> 2013-09-30 11:36:14 -0700;
  • d2e8737 (origin/RELEASE_2_12, RELEASE_2_12) 2.4.0: vignette clarifications by r.sauteraud <unknown> 2013-07-10 18:03:55 +0000;
  • 85b9e48 force delete before 2.4.0 by r.sauteraud <unknown> 2013-07-10 18:01:17 +0000;
  • a1b0cbe 2.5.0: bump devel after release 2.4.0 by r.sauteraud <unknown> 2013-07-10 17:58:16 +0000;
  • d0b677e force delete before 2.5.0 by r.sauteraud <unknown> 2013-07-10 17:56:25 +0000;
  • e46fa4a 2.3.05 Bumped version to match PICS by SRenan <renan.sauteraud@gmail.com> 2013-07-09 18:20:26 -0700;
  • d357ee3 2.1.05 Fixed vignette parallel Removed useless dataType by SRenan <renan.sauteraud@gmail.com> 2013-07-09 18:18:24 -0700;
  • 72e98c3 TestSS by Sangsoon Woo <swoo@blackrhino.fhcrc.org> 2013-05-23 13:42:02 -0700;
  • 504c981 Transfered Rsamtools dependency to PICS by SRenan <renan.sauteraud@gmail.com> 2013-04-18 12:50:40 -0700;
  • c3f48d3 Use readGAlignmentsFromBam(), new name for readBamGappedAlignments(). by Herve Pages <hpages@fhcrc.org> 2013-04-11 01:44:12 +0000;
  • ad6fa38 Moved bam2gr to PICS by SRenan <renan.sauteraud@gmail.com> 2013-04-10 13:23:41 -0700;
  • 251a6d9 Faster bam2gr by SRenan <renan.sauteraud@gmail.com> 2013-04-09 16:22:59 -0700;
  • 3130b4a Bump y in version x.y.z to odd number in devel by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-04-03 22:06:11 +0000;
  • 47da256 Creating branch for BioC 2.12 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-04-03 21:56:22 +0000;
  • be3a150 bump y of x.y.z version number for BioC 2.12 release by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-04-03 21:32:27 +0000;
  • 50725d3 remove leading 0 in last segment of version number by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-04-03 21:27:01 +0000;
  • 37883d9 updated doc rebuilt vignettes by SRenan <renan.sauteraud@gmail.com> 2013-03-28 11:51:28 -0700;
  • e4f3436 2.1.04 updated doc by r.sauteraud <unknown> 2013-03-28 18:51:10 +0000;
  • 9f07b95 force delete by r.sauteraud <unknown> 2013-03-28 18:48:51 +0000;
  • 0672000 Smaller bam file for vignette by r.sauteraud <unknown> 2013-03-25 22:14:52 +0000;
  • d5f4af2 force delete by r.sauteraud <unknown> 2013-03-25 22:13:07 +0000;
  • e0a28d4 Changed example file and vignette accordingly by SRenan <renan.sauteraud@gmail.com> 2013-03-25 15:04:16 -0700;
  • 8e13f33 Added as.data.frame by SRenan <renan.sauteraud@gmail.com> 2013-03-14 14:47:43 -0700;
  • ac431b5 Fixed density method by SRenan <renan.sauteraud@gmail.com> 2013-03-14 11:05:09 -0700;
  • 3f9e127 (origin/RELEASE_2_11, RELEASE_2_11) Pushed devel to release by r.sauteraud <unknown> 2013-03-07 22:51:53 +0000;
  • acd697e merge before delete by r.sauteraud <unknown> 2013-03-07 22:49:57 +0000;
  • 55603a7 Cleanup by SRenan <renan.sauteraud@gmail.com> 2013-03-04 17:54:05 -0800;
  • 1b1bb3c fix for segmentPING memory by r.sauteraud <unknown> 2013-03-05 01:47:06 +0000;
  • 6d67135 force delete before merge by r.sauteraud <unknown> 2013-03-05 01:40:41 +0000;
  • 79e8c00 Minor changes by SRenan <renan.sauteraud@gmail.com> 2013-03-04 15:05:50 -0800;
  • d533a95 Added read width limit for PE by SRenan <renan.sauteraud@gmail.com> 2013-02-15 16:15:53 -0800;
  • f5dfed2 Added option for multiple cores in postPING by SRenan <renan.sauteraud@gmail.com> 2013-02-12 10:31:31 -0800;
  • ee4d8a2 Bumped version to even number by r.sauteraud <unknown> 2013-01-17 21:13:04 +0000;
  • 801983e merged -r 72525:72526 from trunk by r.sauteraud <unknown> 2013-01-16 22:17:48 +0000;
  • 4fbd484 force delete before merge by r.sauteraud <unknown> 2013-01-16 22:15:02 +0000;
  • ad39350 Pushed to bioc devel by SRenan <renan.sauteraud@gmail.com> 2013-01-15 10:15:09 -0800;
  • a37b466 bumped to 1.99.0 by r.sauteraud <unknown> 2013-01-15 01:47:57 +0000;
  • 31ba46b delete before update by r.sauteraud <unknown> 2013-01-15 01:46:20 +0000;
  • 9b9f279 Bumped version so next release will be 2.0.0 by SRenan <renan.sauteraud@gmail.com> 2013-01-09 16:11:26 -0800;
  • 8d73d4b removed debug leftover by SRenan <renan.sauteraud@gmail.com> 2013-01-09 16:08:57 -0800;
  • 579c45f fixed typo in vignette fixed CoverageTrack for SE by SRenan <renan.sauteraud@gmail.com> 2013-01-09 16:06:25 -0800;