Graph ofOncoSimulR
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  • b5bcb5a (HEAD -> master, origin/master, origin/HEAD) 3.99.9: vignette problem ARM64 Mac build? by ramon diaz-uriarte (at Phelsuma) <rdiaz02@gmail.com> 2022-10-01 13:40:27 +0200;
  • 96de909 3.99.8: unity build, miscell typo fixes by ramon diaz-uriarte (at Phelsuma) <rdiaz02@gmail.com> 2022-09-16 01:29:20 +0200;
  • ea2792e 3.99.8 unity build by ramon diaz-uriarte (at Phelsuma) <rdiaz02@gmail.com> 2022-09-15 21:31:14 +0200;
  • 9d183dd 3.99.8: unity build by ramon diaz-uriarte (at Phelsuma) <rdiaz02@gmail.com> 2022-09-15 21:29:51 +0200;
  • 7d0e975 3.99.7: c++14 and no o3 in win to try faster build by ramon diaz-uriarte (at Phelsuma) <rdiaz02@gmail.com> 2022-09-13 17:28:36 +0200;
  • 3c3d972 ooops, wrong date by ramon diaz-uriarte (at Phelsuma) <rdiaz02@gmail.com> 2022-09-12 20:23:45 +0200;
  • 9579efe 3.99.6: exprtk updated by ramon diaz-uriarte (at Phelsuma) <rdiaz02@gmail.com> 2022-09-12 20:21:57 +0200;
  • a65c8e8 exprtk updated by ramon diaz-uriarte (at Phelsuma) <rdiaz02@gmail.com> 2022-09-12 18:47:53 +0200;
  • 98e9f87 3.99.5; logo funding by ramon diaz-uriarte (at Phelsuma) <rdiaz02@gmail.com> 2022-07-19 16:19:56 +0200;
  • add8cdf 3.99.4: fixing failing test.Z-interventions on Mac by ramon diaz-uriarte (at Phelsuma) <rdiaz02@gmail.com> 2022-07-04 23:06:23 +0200;
  • 5505160 3.99.3: failing a test in Mac OS by ramon diaz-uriarte (at Phelsuma) <rdiaz02@gmail.com> 2022-06-30 14:59:27 +0200;
  • 4001b0c 3.99.2 by ramon diaz-uriarte (at Phelsuma) <rdiaz02@gmail.com> 2022-06-29 15:37:33 +0200;
  • 0dae6b3 3.99.2 by ramon diaz-uriarte (at Phelsuma) <rdiaz02@gmail.com> 2022-06-29 14:44:37 +0200;
  • 79ffadf 3.99.1: interventions, death with fdf, user variables by ramon diaz-uriarte (at Phelsuma) <rdiaz02@gmail.com> 2022-06-25 16:24:13 +0200;
  • 7af7ac6 bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:20:38 +0000;
  • 17fdf39 (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:20:38 +0000;
  • 154875d bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:14:49 +0000;
  • 7521636 (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:14:49 +0000;
  • ad38a80 3.1.2, better test of poset transformation by ramon diaz-uriarte (at Phelsuma) <rdiaz02@gmail.com> 2021-10-06 22:18:41 +0200;
  • 4127435 3.1.1: XOR, AND, OR: plots of DAGs honor all possible values by ramon diaz-uriarte (at Phelsuma) <rdiaz02@gmail.com> 2021-10-06 20:38:06 +0200;
  • d7183c4 bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:06:18 +0000;
  • 3add541 (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:06:18 +0000;
  • d0ae1fb increased version to force rebuild with new NEWS file by ramon diaz-uriarte (at Phelsuma) <rdiaz02@gmail.com> 2021-05-04 15:12:02 +0200;
  • e524981 NEWS file updated for BioC release by ramon diaz-uriarte (at Phelsuma) <rdiaz02@gmail.com> 2021-05-04 15:11:15 +0200;
  • e5e1295 2.99.93; fixed bugs and test errors for three-element vector by ramon diaz-uriarte (at Phelsuma) <rdiaz02@gmail.com> 2021-04-30 01:22:43 +0200;
  • 43ee9ba 2.99.92: rfitness with a three-element vector for scale and SSWM examples by ramon diaz-uriarte (at Phelsuma) <rdiaz02@gmail.com> 2021-04-27 15:58:19 +0200;
  • b56a9e8 v. 2.99.9: fixed one-gene cases, nem in Readme, typos; removin unused code and v.1 from long tests by ramon diaz-uriarte (at Phelsuma) <rdiaz02@gmail.com> 2021-04-22 12:27:49 +0200;
  • 6f7ba7f v.2.99.7 by ramon diaz-uriarte (at Phelsuma) <rdiaz02@gmail.com> 2020-12-30 16:01:49 +0100;
  • 3c244b0 correct date by ramon diaz-uriarte (at Phelsuma) <rdiaz02@gmail.com> 2020-12-30 01:43:01 +0100;
  • 007e09e v.2.99.6: no v.1, slightly faster vignette by ramon diaz-uriarte (at Phelsuma) <rdiaz02@gmail.com> 2020-12-30 01:39:06 +0100;
  • f417ffe v. 2.99.6: no v.1 by ramon diaz-uriarte (at Phelsuma) <rdiaz02@gmail.com> 2020-12-30 01:29:19 +0100;
  • 04c0640 2.99.5 by ramon diaz-uriarte (at Phelsuma) <rdiaz02@gmail.com> 2020-12-18 23:20:58 +0100;
  • a43f498 2.99.4 by ramon diaz-uriarte (at Phelsuma) <rdiaz02@gmail.com> 2020-12-17 16:07:07 +0100;
  • 8d0896d v. 2.99.3 by ramon diaz-uriarte (at Phelsuma) <rdiaz02@gmail.com> 2020-12-13 15:35:47 +0100;
  • 630adf2 2.99.2 by ramon diaz-uriarte (at Phelsuma) <rdiaz02@gmail.com> 2020-12-11 21:53:48 +0100;
  • 4068375 version 2.99.1: frequency-dependent fitness functionality by ramon diaz-uriarte (at Phelsuma) <rdiaz02@gmail.com> 2020-12-10 12:41:53 +0100;
  • ddca1e2 bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 10:57:45 -0400;
  • 1990185 (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 10:57:45 -0400;
  • f4821fe 2.19.2: Updated ctb: added Magellan and exprTk and clarified contributions by ramon diaz-uriarte (at Phelsuma) <rdiaz02@gmail.com> 2020-06-03 15:57:39 +0200;
  • 0a9f141 2.19.1 by ramon diaz-uriarte (at Phelsuma) <rdiaz02@gmail.com> 2020-05-06 12:10:54 +0200;
  • 5d22ac2 bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:41:48 +0000;
  • f3a1274 (origin/RELEASE_3_11, RELEASE_3_11) bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:41:48 +0000;
  • a947da6 2.17.92 by ramon diaz-uriarte (at Phelsuma) <rdiaz02@gmail.com> 2020-04-27 01:20:51 +0200;
  • 4df5e78 oooops, was failing tests in windows by ramon diaz-uriarte (at Phelsuma) <rdiaz02@gmail.com> 2020-04-24 04:20:12 +0200;
  • ae7dfb0 2.17.91: fixed warning with Wrestrict from Magellan sources by ramon diaz-uriarte (at Phelsuma) <rdiaz02@gmail.com> 2020-04-24 03:29:59 +0200;
  • 2d6b985 (origin/RELEASE_3_10) 2.16.1; fixed warnings and "the condition has length > 1" by ramon diaz-uriarte (at Phelsuma) <rdiaz02@gmail.com> 2020-04-10 14:23:01 +0200;
  • 36283a6 2.17.9: POM doc and adapt to stringsAsFactors = FALSE by ramon diaz-uriarte (at Phelsuma) <rdiaz02@gmail.com> 2020-03-17 13:31:37 +0100;
  • 087f64d 2.17.8 by ramon diaz-uriarte (at Phelsuma) <rdiaz02@gmail.com> 2020-02-02 00:58:49 +0100;
  • eb53711 2.17.7: no longer depends on nem; more models from MAGELLAN by ramon diaz-uriarte (at Phelsuma) <rdiaz02@gmail.com> 2020-01-30 14:39:14 +0100;
  • 71e4aac 2.17.5 by ramon diaz-uriarte (at Phelsuma) <rdiaz02@gmail.com> 2019-12-19 21:22:38 +0100;
  • 0796b29 2.17.4 by ramon diaz-uriarte (at Phelsuma) <rdiaz02@gmail.com> 2019-12-19 09:27:20 +0100;
  • 00d80a9 2.17.3: here is where fno-common should be by ramon diaz-uriarte (at Phelsuma) <rdiaz02@gmail.com> 2019-12-17 16:17:37 +0100;
  • f63ae90 2.17.2: fno-common by ramon diaz-uriarte (at Phelsuma) <rdiaz02@gmail.com> 2019-12-17 16:14:43 +0100;
  • 4912fe1 2.17.2: if with logical length > 1 fixed by ramon diaz-uriarte (at Phelsuma) <rdiaz02@gmail.com> 2019-12-17 12:25:52 +0100;
  • edc593d 2.17.1: rfitness, clarified log and truncate, and Magellan_stats, return vector and do not use log by default by ramon diaz-uriarte (at Phelsuma) <rdiaz02@gmail.com> 2019-11-28 20:58:05 +0100;
  • f973f21 bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:37:44 -0400;
  • 753d7de bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:09:01 -0400;
  • fefc3cf fscanf warning under Linux with BioC by ramon diaz-uriarte (at Phelsuma) <rdiaz02@gmail.com> 2019-08-14 12:38:39 +0200;
  • fd073de 2.15.1: Added MAGELLANs sources and functionality from MAGELLAN by ramon diaz-uriarte (at Phelsuma) <rdiaz02@gmail.com> 2019-07-02 16:55:40 +0200;
  • cba8a2f bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 12:11:39 -0400;
  • 2a871d8 (origin/RELEASE_3_9, RELEASE_3_9) bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 11:53:48 -0400;
  • 4ac900b 2.13.2 by ramon diaz-uriarte (at Phelsuma) <rdiaz02@gmail.com> 2019-03-18 12:11:47 +0100;
  • edc25f8 v 2.13.1: works with STRICT_R_HEADERS by ramon diaz-uriarte (at Phelsuma) <rdiaz02@gmail.com> 2019-02-07 19:45:19 +0100;
  • 4116089 bump x.y.z versions to odd y after creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:54:33 -0400;
  • 10d3d45 (origin/RELEASE_3_8, RELEASE_3_8) bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:41:54 -0400;
  • 1e56118 ooops, did not bump version by ramon diaz-uriarte (at Phelsuma) <rdiaz02@gmail.com> 2018-07-20 21:11:42 +0200;
  • 65fa139 no longer refs to older installer and robustify one test by ramon diaz-uriarte (at Phelsuma) <rdiaz02@gmail.com> 2018-07-16 22:27:32 +0200;
  • 546b7e7 bump x.y.z versions to odd y after creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:41:40 -0400;
  • ed30da1 (origin/RELEASE_3_7, RELEASE_3_7) bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:35:33 -0400;
  • 302b161 2.9.10: test.Z-fixation: some tests only on Linux because rng is done in C++. by ramon diaz-uriarte (at Phelsuma) <rdiaz02@gmail.com> 2018-04-19 21:17:38 +0200;
  • e719a81 2.9.9 by ramon diaz-uriarte (at Phelsuma) <rdiaz02@gmail.com> 2018-04-18 01:58:39 +0200;
  • 885ead9 v. 2.9.6 by ramon diaz-uriarte (at Phelsuma) <rdiaz02@gmail.com> 2017-12-27 14:28:03 +0100;
  • 23b7c97 clang was failing in mac by ramon diaz-uriarte (at Phelsuma) <rdiaz02@gmail.com> 2017-11-27 11:04:35 +0100;
  • ab43994 v. 2.9.2 - LOD: using only the strict Szendro et al. meaning. - POM: computed in C++. - Using fitness landscape directly when given as input (no conversion to epistasis) by ramon diaz-uriarte (at Phelsuma) <rdiaz02@gmail.com> 2017-11-24 13:41:48 +0100;
  • 701c5ac bump x.y.z versions to odd y after creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:53:30 -0400;
  • 4e3de2b (origin/RELEASE_3_6, RELEASE_3_6) bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:40:20 -0400;
  • f9a38e2 version 2.7.2 Changes in version 2.7.2 (2017-09-27): - genot_to_adj_mat in C++. - fast_peaks (for no backmutation cases). - Better explanation and testing of peaks and valleys. - Clarified simOGraph transitive reduction. - Better handling of ti corner cases. - Magellan reading fuctions adapted to output of newer (as of 2017-07) version of Magellan. - sorting gene names in allGenotypes_to_matrix. - sampledGenotypes: genotype names with sorted gene names. by ramon diaz-uriarte (at Phelsuma) <rdiaz02@gmail.com> 2017-09-27 12:23:50 +0200;
  • 6e0554b bump x.y.z versions to odd y after creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:50:57 +0000;
  • 05e566c (origin/RELEASE_3_5, RELEASE_3_5) Creating branch for BioC 3.5 release by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:45:44 +0000;
  • da3a572 bump x.y.z versions to even y prior to creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:25:24 +0000;
  • 565c443 2.5.14: fixed repeated entries in NEWS for BioC 3.5 release by Ramon Diaz-Uriarte <rdiaz02@gmail.com> 2017-04-07 08:28:27 +0000;
  • 556ae3e 2.5.13: updated NEWS for BioC 3.5 release by Ramon Diaz-Uriarte <rdiaz02@gmail.com> 2017-04-07 08:19:25 +0000;
  • b137a4a v.2.5.12 by Ramon Diaz-Uriarte <rdiaz02@gmail.com> 2017-02-18 20:20:42 +0000;
  • f7b64a1 typo in NEWS by Ramon Diaz-Uriarte <rdiaz02@gmail.com> 2017-01-10 06:53:21 +0000;
  • a9ecbe5 2.5.9; code coverage comments in vignette by Ramon Diaz-Uriarte <rdiaz02@gmail.com> 2017-01-08 23:16:08 +0000;
  • c06244a 2.5.8; handle trivial cases in genotFitness by Ramon Diaz-Uriarte <rdiaz02@gmail.com> 2016-12-17 12:59:03 +0000;
  • c3eeacb 2.5.7; vignette work by Ramon Diaz-Uriarte <rdiaz02@gmail.com> 2016-12-15 18:43:47 +0000;
  • bdb105a v. 2.5.6 by Ramon Diaz-Uriarte <rdiaz02@gmail.com> 2016-12-14 17:32:32 +0000;
  • f9f9ab9 2.5.5; vignette fixes by Ramon Diaz-Uriarte <rdiaz02@gmail.com> 2016-12-14 12:53:22 +0000;
  • 74449e3 2.5.4 by Ramon Diaz-Uriarte <rdiaz02@gmail.com> 2016-12-12 14:47:32 +0000;
  • bbd7608 2.5.3. Vignette enhancements by Ramon Diaz-Uriarte <rdiaz02@gmail.com> 2016-12-12 12:06:14 +0000;
  • fc38a87 v.2.5.2 - Lots and lots of addition to vignette including benchmarks. - Diversity of sampled genotypes. - Genotyping error can be added in samplePop. - LOD and POM (lines of descent, path of maximum, sensu Szendro et al.). - simOGraph can also out rT data frames. - Better (and better explained) estimates of simulation error for McFL. by Ramon Diaz-Uriarte <rdiaz02@gmail.com> 2016-12-10 16:05:05 +0000;
  • c95df82 v.2.5.1. \n - much faster accessible genots \n - AND of drivers and size \n - fixation \n - doc. improvements by Ramon Diaz-Uriarte <rdiaz02@gmail.com> 2016-11-13 09:46:27 +0000;
  • db492e2 bump x.y.z versions to odd 'y' after creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:10:43 +0000;
  • 019b223 (origin/RELEASE_3_4, RELEASE_3_4) Creating branch for BioC 3.4 release by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:00:47 +0000;
  • f169107 bump x.y.z versions to even 'y' prior to creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 18:45:06 +0000;
  • 31ab9f9 updated NEWS for BioC 3.4 release by Ramon Diaz-Uriarte <rdiaz02@gmail.com> 2016-10-13 13:54:29 +0000;
  • b5efadc minor by Ramon Diaz-Uriarte <rdiaz02@gmail.com> 2016-09-22 19:14:42 +0000;
  • 43956e0 another mess with missing files by Ramon Diaz-Uriarte <rdiaz02@gmail.com> 2016-09-22 18:14:36 +0000;
  • a4ef76a some files had not been removed by Ramon Diaz-Uriarte <rdiaz02@gmail.com> 2016-09-22 17:43:20 +0000;