Bioconductor Code: Browse

September 27, 2017

	Viewf9a38e2 version 2.7.2 Changes in version 2.7.2 (2017-09-27): - genot_to_adj_mat in C++. - fast_peaks (for no backmutation cases). - Better explanation and testing of peaks and valleys. - Clarified simOGraph transitive reduction. - Better handling of ti corner cases. - Magellan reading fuctions adapted to output of newer (as of 2017-07) version of Magellan. - sorting gene names in allGenotypes_to_matrix. - sampledGenotypes: genotype names with sorted gene names. ramon diaz-uriarte (at Phelsuma) authored on 27/09/2017 10:23:50

December 10, 2016

	Viewfc38a87 v.2.5.2 - Lots and lots of addition to vignette including benchmarks. - Diversity of sampled genotypes. - Genotyping error can be added in samplePop. - LOD and POM (lines of descent, path of maximum, sensu Szendro et al.). - simOGraph can also out rT data frames. - Better (and better explained) estimates of simulation error for McFL. Ramon Diaz-Uriarte authored on 10/12/2016 16:05:05

November 13, 2016

	Viewc95df82 v.2.5.1. \n - much faster accessible genots \n - AND of drivers and size \n - fixation \n - doc. improvements Ramon Diaz-Uriarte authored on 13/11/2016 09:46:27

July 5, 2016

	View4d70b94 v.2.3.7; detectionProb mechanism;\n documentation enhancements;\n more tests Ramon Diaz-Uriarte authored on 05/07/2016 15:59:56

June 23, 2016

	View50a9420 v. 2.3.3.\n mutator, fitness landscapes, rfitness, and many other changes Ramon Diaz-Uriarte authored on 23/06/2016 16:43:51

April 7, 2016

	View8d75a8a - v.2.1.3: sporadic bug in countDrivers;\n - NEWS for BioC 3.3. release. Ramon Diaz-Uriarte authored on 07/04/2016 15:57:06

March 28, 2016

	View1b1e5e0 v.2.1.2: removed root requir.;\n more tests;\n improved docs and vignette Ramon Diaz-Uriarte authored on 28/03/2016 14:08:32

March 7, 2016

	Viewdebcf5f v-2.1.1: stacked and area plots, genotype plots, and mut.prop.growth Ramon Diaz-Uriarte authored on 07/03/2016 13:48:31

October 1, 2015

	Viewf4bae72 more on robust tests Ramon Diaz-Uriarte authored on 01/10/2015 12:49:30

June 25, 2015

	View1d9018c initMutant: fixed bug and added to vignette Ramon Diaz-Uriarte authored on 25/06/2015 12:28:13

June 22, 2015

	View5d9775a fixed Windows issues with bool; added phylogenies Ramon Diaz-Uriarte authored on 22/06/2015 17:55:14

June 18, 2015

	View2db2644 1.99.1: fixing Windoze and RData size Ramon Diaz-Uriarte authored on 18/06/2015 18:12:30

June 17, 2015

	Viewe693f15 v. 1.99.0 Ramon Diaz-Uriarte authored on 17/06/2015 17:17:55