Bioconductor Code: Browse

September 27, 2017

	View f9a38e2 version 2.7.2 Changes in version 2.7.2 (2017-09-27): - genot_to_adj_mat in C++. - fast_peaks (for no backmutation cases). - Better explanation and testing of peaks and valleys. - Clarified simOGraph transitive reduction. - Better handling of ti corner cases. - Magellan reading fuctions adapted to output of newer (as of 2017-07) version of Magellan. - sorting gene names in allGenotypes_to_matrix. - sampledGenotypes: genotype names with sorted gene names. ramon diaz-uriarte (at Phelsuma) authored on 27/09/2017 10:23:50

February 18, 2017

	View b137a4a v.2.5.12 Ramon Diaz-Uriarte authored on 18/02/2017 20:20:42

January 8, 2017

	View a9ecbe5 2.5.9; code coverage comments in vignette Ramon Diaz-Uriarte authored on 08/01/2017 23:16:08

December 17, 2016

	View c06244a 2.5.8; handle trivial cases in genotFitness Ramon Diaz-Uriarte authored on 17/12/2016 12:59:03

December 10, 2016

	View fc38a87 v.2.5.2 - Lots and lots of addition to vignette including benchmarks. - Diversity of sampled genotypes. - Genotyping error can be added in samplePop. - LOD and POM (lines of descent, path of maximum, sensu Szendro et al.). - simOGraph can also out rT data frames. - Better (and better explained) estimates of simulation error for McFL. Ramon Diaz-Uriarte authored on 10/12/2016 16:05:05

November 13, 2016

	View c95df82 v.2.5.1. \n - much faster accessible genots \n - AND of drivers and size \n - fixation \n - doc. improvements Ramon Diaz-Uriarte authored on 13/11/2016 09:46:27

September 22, 2016

	View 34c1b54 2.3.17; vignette: typos, decreased size and time Ramon Diaz-Uriarte authored on 22/09/2016 16:47:10

August 10, 2016

	View 13b90b4 2.3.11;\n - evalAllGenotypes: order = FALSE by default; \n - Clarified difference plotFitnessEffects and plotFitnessLandscape. Ramon Diaz-Uriarte authored on 10/08/2016 15:47:33

July 9, 2016

	View 7c1a570 v.2.3.9. accessible genotypes Ramon Diaz-Uriarte authored on 09/07/2016 13:43:10

July 8, 2016

	View 3bbfa52 v.2.3.8 Ramon Diaz-Uriarte authored on 08/07/2016 11:17:18

July 5, 2016

	View 4d70b94 v.2.3.7; detectionProb mechanism;\n documentation enhancements;\n more tests Ramon Diaz-Uriarte authored on 05/07/2016 15:59:56

June 25, 2016

	View df13108 v.2.3.6;\n improved test coverage Ramon Diaz-Uriarte authored on 25/06/2016 16:08:52
	View 65cb86f v.2.3.5; to_Magellan Ramon Diaz-Uriarte authored on 25/06/2016 00:53:22

June 23, 2016

	View 50a9420 v. 2.3.3.\n mutator, fitness landscapes, rfitness, and many other changes Ramon Diaz-Uriarte authored on 23/06/2016 16:43:51

April 7, 2016

	View 8d75a8a - v.2.1.3: sporadic bug in countDrivers;\n - NEWS for BioC 3.3. release. Ramon Diaz-Uriarte authored on 07/04/2016 15:57:06