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v. 2.9.2 - LOD: using only the strict Szendro et al. meaning. - POM: computed in C++. - Using fitness landscape directly when given as input (no conversion to epistasis)ramon diaz-uriarte (at Phelsuma) authored on 24/11/2017 12:41:48 |
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version 2.7.2 Changes in version 2.7.2 (2017-09-27): - genot_to_adj_mat in C++. - fast_peaks (for no backmutation cases). - Better explanation and testing of peaks and valleys. - Clarified simOGraph transitive reduction. - Better handling of ti corner cases. - Magellan reading fuctions adapted to output of newer (as of 2017-07) version of Magellan. - sorting gene names in allGenotypes_to_matrix. - sampledGenotypes: genotype names with sorted gene names.ramon diaz-uriarte (at Phelsuma) authored on 27/09/2017 10:23:50 |
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2.5.14: fixed repeated entries in NEWS for BioC 3.5 releaseRamon Diaz-Uriarte authored on 07/04/2017 08:28:27 |
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2.5.13: updated NEWS for BioC 3.5 releaseRamon Diaz-Uriarte authored on 07/04/2017 08:19:25 |
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v.2.5.12Ramon Diaz-Uriarte authored on 18/02/2017 20:20:42 |
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typo in NEWSRamon Diaz-Uriarte authored on 10/01/2017 06:53:21 |
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2.5.9; code coverage comments in vignetteRamon Diaz-Uriarte authored on 08/01/2017 23:16:08 |
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2.5.8; handle trivial cases in genotFitnessRamon Diaz-Uriarte authored on 17/12/2016 12:59:03 |
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2.5.7; vignette workRamon Diaz-Uriarte authored on 15/12/2016 18:43:47 |
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v. 2.5.6Ramon Diaz-Uriarte authored on 14/12/2016 17:32:32 |
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2.5.5; vignette fixesRamon Diaz-Uriarte authored on 14/12/2016 12:53:22 |
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2.5.4Ramon Diaz-Uriarte authored on 12/12/2016 14:47:32 |
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2.5.3. Vignette enhancementsRamon Diaz-Uriarte authored on 12/12/2016 12:06:14 |
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v.2.5.2 - Lots and lots of addition to vignette including benchmarks. - Diversity of sampled genotypes. - Genotyping error can be added in samplePop. - LOD and POM (lines of descent, path of maximum, sensu Szendro et al.). - simOGraph can also out rT data frames. - Better (and better explained) estimates of simulation error for McFL.Ramon Diaz-Uriarte authored on 10/12/2016 16:05:05 |
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v.2.5.1. \n - much faster accessible genots \n - AND of drivers and size \n - fixation \n - doc. improvementsRamon Diaz-Uriarte authored on 13/11/2016 09:46:27 |