@@ -1,8 +1,8 @@

 Package: OncoSimulR

 Type: Package

 Title: Forward Genetic Simulation of Cancer Progression with Epistasis 

-Version: 2.13.0

-Date: 2018-07-16

+Version: 2.13.1

+Date: 2019-02-07

 Authors@R: c(person("Ramon", "Diaz-Uriarte", role = c("aut", "cre"),

 		     email = "rdiaz02@gmail.com"),

 	      person("Mark", "Taylor", role = "ctb", email = "ningkiling@gmail.com"))

@@ -428,8 +428,11 @@ oncoSimulPop <- function(Nindiv,

                         detectionProb = detectionProb,

                         AND_DrvProbExit = AND_DrvProbExit,

                         fixation = fixation),

-                    mc.cores = mc.cores

-                    )

+                    mc.cores = mc.cores)

+    ## mc.allow.recursive = FALSE ## FIXME: remove?

+                    ## done for covr issue

+                    ## https://github.com/r-lib/covr/issues/335#issuecomment-424116766

+                    

     class(pop) <- "oncosimulpop"

     attributes(pop)$call <- match.call()

     return(pop)

@@ -1,3 +1,9 @@

+Changes in version 2.13.1 (2019-02-07):

+	- bumped to one over the BioC-3.9 version

+

+Changes in version 2.11.2 (2018-09-24):

+	- works with STRICT_R_HEADERS

+	

 Changes in version 2.11.1:

 	- robustify test.fixation.R, Local max, tolerance

@@ -22,8 +22,9 @@

 #include "common_classes.h"

 #include "bnb_common.h"

 #include "new_restrict.h"

-#include <Rcpp.h>

+#include <cfloat>

 #include <limits>

+#include <Rcpp.h>

 #include <iostream>

 #include <random>

 #include <set>

@@ -17,7 +17,7 @@

 #include "debug_common.h"

 #include "common_classes.h"

 #include "bnb_common.h"

-

+#include <cfloat> 

 #include <limits>

 #include <iostream>

 #include <random>

@@ -14,7 +14,7 @@

 //     along with this program.  If not, see <http://www.gnu.org/licenses/>.

-

+#include <cfloat> 

 #include "bnb_common.h"

 #include "new_restrict.h" // for the TypeModel enum

 #include <Rcpp.h>

@@ -1,15 +1,15 @@

 \usepackage[%

-		shash={c58241c},

-		lhash={c58241c578e1e58ea975ab0283f4f9a9898be60a},

-		authname={ramon diaz-uriarte (at Phelsuma)},

+		shash={fd5f72e},

+		lhash={fd5f72ece0484508a63cf408dbe6ab2cdb5cb5b2},

+		authname={Ramon Diaz-Uriarte (at Coleonyx)},

 		authemail={rdiaz02@gmail.com},

-		authsdate={2018-04-18},

-		authidate={2018-04-18 02:15:18 +0200},

-		authudate={1524010518},

-		commname={ramon diaz-uriarte (at Phelsuma)},

+		authsdate={2018-05-04},

+		authidate={2018-05-04 18:44:29 +0200},

+		authudate={1525452269},

+		commname={Ramon Diaz-Uriarte (at Coleonyx)},

 		commemail={rdiaz02@gmail.com},

-		commsdate={2018-04-18},

-		commidate={2018-04-18 02:15:18 +0200},

-		commudate={1524010518},

+		commsdate={2018-05-04},

+		commidate={2018-05-04 18:44:29 +0200},

+		commudate={1525452269},

 		refnames={ (HEAD -> master, origin/master, origin/HEAD)}

 	]{gitsetinfo}

\ No newline at end of file