Browse code

3.99.9: vignette problem ARM64 Mac build?

ramon diaz-uriarte (at Phelsuma) authored on 01/10/2022 11:40:27
Showing3 changed files

... ...
@@ -1,8 +1,8 @@
1 1
 Package: OncoSimulR
2 2
 Type: Package
3 3
 Title: Forward Genetic Simulation of Cancer Progression with Epistasis 
4
-Version: 3.99.8
5
-Date: 2022-09-15
4
+Version: 3.99.9
5
+Date: 2022-09-30
6 6
 Authors@R: c(
7 7
 	      person("Ramon", "Diaz-Uriarte", role = c("aut", "cre"),	
8 8
  	   		     email = "rdiaz02@gmail.com"),
... ...
@@ -1,3 +1,7 @@
1
+Changes in version 3.99.9 (2022-09-30):
2
+	- Minor vignette split of code, to try to detect
3
+	  location of problem with ARM64 Mac build.
4
+	  
1 5
 Changes in version 3.99.8 (2022-09-15):
2 6
 	- Using "Unity builds" to decrease build (compilation) time;
3 7
 	  see file inst/miscell/README_Unity_compilation.
... ...
@@ -9792,7 +9792,11 @@ afe4 <- allFitnessEffects(genotFitness = r1fd,
9792 9792
                          frequencyDependentFitness = TRUE,
9793 9793
                          frequencyType = "rel")
9794 9794
 
9795
+mtfd <- allMutatorEffects(epistasis = c("A" = 0.1,
9796
+                                        "B" = 10))
9797
+```
9795 9798
 
9799
+```{r fdfmutex1}
9796 9800
 set.seed(1)
9797 9801
 s1fd <- oncoSimulIndiv(afe4, 
9798 9802
                      model = "McFL", 
... ...
@@ -9805,10 +9809,10 @@ s1fd <- oncoSimulIndiv(afe4,
9805 9809
                      errorHitMaxTries = FALSE, 
9806 9810
                      errorHitWallTime = FALSE)
9807 9811
 plot(s1fd, show = "genotypes")
9812
+```
9808 9813
 
9809 9814
 
9810
-mtfd <- allMutatorEffects(epistasis = c("A" = 0.1,
9811
-                                      "B" = 10))
9815
+```{r fdfmutex2}
9812 9816
 set.seed(1)
9813 9817
 s2fd <- oncoSimulIndiv(afe4,
9814 9818
                      muEF = mtfd,