git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/OncoSimulR@109414 bc3139a8-67e5-0310-9ffc-ced21a209358
Ramon Diaz-Uriarte authored on 09/10/2015 10:56:43
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Package: OncoSimulR |
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Type: Package |
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Title: Forward Genetic Simulation of Cancer Progresion with Epistasis |
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-Version: 1.99.8 |
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-Date: 2015-30-01 |
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+Version: 1.99.9 |
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+Date: 2015-10-09 |
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Author: Ramon Diaz-Uriarte. |
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Maintainer: Ramon Diaz-Uriarte <rdiaz02@gmail.com> |
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Description: Functions for forward population genetic simulation in |
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+Changes in version 1.99.9 (2015-10-08): |
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+ - Fixed NEWS file. |
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+ - Removed empty file. |
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+ |
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Changes in version 1.99.8 (2015-10-01): |
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- - test "initMutant with oncoSimulSample, 2" occasionally fails |
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+ - Test "initMutant with oncoSimulSample, 2" occasionally failed. |
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Changes in version 1.99.7 (2015-09-27): |
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- - initMutant available in oncoSimulPop and oncoSimulSample |
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+ - initMutant available in oncoSimulPop and oncoSimulSample. |
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Changes in version 1.99.6 (2015-09-26): |
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- - Improved test coverage and removed stringsAsfactors from tests |
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- - Consistent handling of corner cases in Bozic |
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- - Miscell minor documentation improvements |
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+ - Improved test coverage and removed stringsAsfactors from tests. |
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+ - Consistent handling of corner cases in Bozic. |
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+ - Miscell minor documentation improvements. |
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Changes in version 1.99.5 (2015-06-25): |
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- Fixed bug in initMutant, added tests, and vignette section. |
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Changes in version 1.99.4 (2015-06-22): |
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+ - Plotting true phylogenies. |
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- Tried randutils, from O'Neill. Won't work with gcc-4.6. |
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- bool issue in Windows/gcc-4.6. |
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- Most all to all.equal in tests. |
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@@ -31,7 +36,7 @@ Changes in version 1.99.1 (2015-06-18): |
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- Reduce size of RData objects with resaveRdaFiles. |
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- Try to compile in Mac: mt RNG must include random in all files. |
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-Changes in version 1.99.0 (2015-06-17): |
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+Changes in version 1.99.01 (2015-06-17): |
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- Many MAJOR changes: we are done moving to v.2 |
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- New way of specifying restrictions (v.2) that allows |
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arbitrary epistatic interactions and order effects, and |
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@@ -41,53 +46,56 @@ Changes in version 1.99.0 (2015-06-17): |
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- Random DAG generation. |
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- Some defaults for v.1 changed. |
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+Changes in version 1.99.00 (2015-04-23): |
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+ - Accumulated changes of former 99.1.2 to 99.1.14: |
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+ |
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+ - changes in intermediate version 1.99.1.14 (2015-04-23): |
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+ - Now are things OK (I messed up the repos) |
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-Changes in version 99.1.14 (2015-04-23): |
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- - Now are things OK (I messed up the repos) |
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- |
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-Changes in version 99.1.13 (2015-04-23) |
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- - Added a couple of drop = FALSE. Their absence lead to crashes in |
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- some strange, borderline cases. |
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- - Increased version to make unambiguous version used for anal. CBN. |
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- |
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-Changes in version 99.1.12 (2015-04-22) |
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- - Removed lots of unused conversion helpers and added more strict |
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- checks and tests of those checks. |
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+ - changes in intermediate version 99.1.13 (2015-04-23) |
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+ - Added a couple of drop = FALSE. Their absence lead to |
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+ crashes in some strange, borderline cases. |
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+ - Increased version to make unambiguous version used for |
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+ anal. CBN. |
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-Changes in version 99.1.11 (2015-04-18) |
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- - Tests of conversion helpers now really working. |
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+ - changes in intermediate version 99.1.12 (2015-04-22) |
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+ - Removed lots of unused conversion helpers and added more |
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+ strict checks and tests of those checks. |
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+ - changes in intermediate version 99.1.11 (2015-04-18) |
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+ - Tests of conversion helpers now really working. |
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-Changes in version 99.1.10 (2015-04-16) |
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- - Added conversion helpers as separate file. |
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- - Added tests of conversion helpers. |
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- - Added generate-random-trees code (separate file). |
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- - More strict now on the poset format and conversions. |
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+ - changes in intermediate version 99.1.10 (2015-04-16) |
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+ - Added conversion helpers as separate file. |
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+ - Added tests of conversion helpers. |
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+ - Added generate-random-trees code (separate file). |
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+ - More strict now on the poset format and conversions. |
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-Changes in version 99.1.9 (2015-04-09) |
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- - added null mutation for when we run out of mutable positions, |
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- and since not clear how to use BNB then. |
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+ - changes in intermediate version 99.1.9 (2015-04-09) |
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+ - added null mutation for when we run out of mutable positions, |
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+ and since not clear how to use BNB then. |
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-Changes in version 99.1.8 (2015-04-03) |
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- - added extraTime. |
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+ - changes in intermediate version 99.1.8 (2015-04-03) |
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+ - added extraTime. |
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-Changes in version 99.1.7 (2015-04-03) |
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- - endTimeEvery removed. Now using minDDrPopSize if needed. |
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+ - changes in intermediate version 99.1.7 (2015-04-03) |
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+ - endTimeEvery removed. Now using minDDrPopSize if needed. |
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-Changes in version 99.1.6 (2015-03-20) |
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- - untilcancer and oncoSimulSample working together |
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+ - changes in intermediate version 99.1.6 (2015-03-20) |
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+ - untilcancer and oncoSimulSample working together |
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-Changes in version 99.1.5 (2015-03-20) |
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- - Using the untilcancer branch |
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+ - changes in intermediate version 99.1.5 (2015-03-20) |
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+ - Using the untilcancer branch |
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-Changes in version 99.1.4 (2014-12-24) |
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- - Added computation of min. of ratio birth/mutation and death/mutation. |
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+ - changes in intermediate version 99.1.4 (2014-12-24) |
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+ - Added computation of min. of ratio birth/mutation and |
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+ death/mutation. |
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-Changes in version 99.1.3 (2014-12-23) |
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- - Fixed segfault when hitting wall time and sampling only once. |
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+ - changes in intermediate version 99.1.3 (2014-12-23) |
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+ - Fixed segfault when hitting wall time and sampling only once. |
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-Changes in version 99.1.2 (2014-12-16) |
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- - Sampling only once |
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+ - changes in intermediate version 99.1.2 (2014-12-16) |
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+ - Sampling only once |
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Changes in version 0.99.2 (2014-07-14) |
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- Consistently using indentation in .Rd files. |
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\usepackage[% |
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- shash={39be2bc},
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- lhash={39be2bc525ceffa46743bd5fd80cde0c1f959434},
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+ shash={3d807e8},
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+ lhash={3d807e8f4219d064e51fdd1d1d901091bb80aa9b},
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authname={Ramon Diaz-Uriarte (at Coleonyx)},
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authemail={rdiaz02@gmail.com},
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- authsdate={2015-10-05},
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- authidate={2015-10-05 00:56:02 +0200},
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- authudate={1443999362},
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+ authsdate={2015-10-09},
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+ authidate={2015-10-09 12:42:34 +0200},
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+ authudate={1444387354},
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commname={Ramon Diaz-Uriarte (at Coleonyx)},
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commemail={rdiaz02@gmail.com},
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- commsdate={2015-10-05},
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- commidate={2015-10-05 00:56:02 +0200},
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- commudate={1443999362},
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+ commsdate={2015-10-09},
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+ commidate={2015-10-09 12:42:34 +0200},
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+ commudate={1444387354},
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refnames={ (HEAD -> master)}
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]{gitsetinfo}
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\ No newline at end of file |