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3.99.8: unity build, miscell typo fixes

ramon diaz-uriarte (at Phelsuma) authored on 15/09/2022 23:29:20
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@@ -60,25 +60,31 @@ fl_generate: FitnessLandscape/main_fl_generate.c  $(MAGELLAN_LIBS)
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 ## export PATH=/x86_64-w64-mingw32.static.posix/bin:$PATH
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 ## Install
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-## time /c/R/R-4.2.1/bin/R.exe CMD INSTALL OncoSimulR
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+## time /c/R/R-4.2.1/bin/R.exe CMD INSTALL --build OncoSimulR && time /c/R/R-4.2.1/bin/R.exe CMD INSTALL OncoSimulR_x.y.z.zip
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 ## Build
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-## time /c/R/R-4.2.1/bin/R.exe CMD build -keep-empty-dirs --no-resave-data OncoSimulR
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+## time /c/R/R-4.2.1/bin/R.exe CMD build --keep-empty-dirs --no-resave-data OncoSimulR
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 ## Check
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-## time /c/R/R-4.2.1/bin/R.exe CMD check --no-multiarch --no-vignettes --timings OncoSimulR_3.4.0.tar.gz
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+## time /c/R/R-4.2.1/bin/R.exe CMD check --no-multiarch --no-vignettes --timings OncoSimulR_x.y.z.tar.gz
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-## Recall I need pandoc and git
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+## Build bin
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+## time /c/R/R-4.2.1/bin/R.exe CMD INSTALL --build OncoSimulR_x.y.z.tar.gz
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+
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+
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+
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+## Recall I need pandoc (and git ---this already installed and in path)
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 ## Install pandoc at C:/pandoc
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-## Git is at C:\Program Files
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-## Add them to the path
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-## export PATH=$PATH:/c/Pandoc:/c/Program\ Files/git/bin
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-## ##now, pdflatex
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+## Add it to the path
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+## export PATH=$PATH:/c/Pandoc
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+## ##now, pdflatex or tinytex
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 ## export PATH=$PATH:/c/Users/ramon/AppData/Roaming/TinyTeX/bin/win32
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+## And install rmarkdown and other suggests
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+## install.packages(c("Oncotree", "rmarkdown", "bookdown", "pander","testthat", "knitr"))
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+## BiocManager::install(version='devel')
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+## BiocManager::install("BiocStyle")
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-## Build bin
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-## time /c/R/R-4.2.1/bin/R.exe CMD INSTALL --build OncoSimulR_3.4.0.tar.gz
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