git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/OncoSimulR@128264 bc3139a8-67e5-0310-9ffc-ced21a209358
Ramon Diaz-Uriarte authored on 07/04/2017 08:28:27
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@@ -1,7 +1,7 @@ |
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Package: OncoSimulR |
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Type: Package |
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Title: Forward Genetic Simulation of Cancer Progression with Epistasis |
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-Version: 2.5.13 |
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+Version: 2.5.14 |
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Date: 2017-04-07 |
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Authors@R: c(person("Ramon", "Diaz-Uriarte", role = c("aut", "cre"),
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email = "rdiaz02@gmail.com"), |
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@@ -4,22 +4,23 @@ Changes in version 2.6.0 (for BioC 3.5): |
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al.). |
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- Diversity of sampled genotypes. |
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- Genotyping error can be added in samplePop. |
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+ - fixation of a genotype/gene as stopping mechanism. |
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- rfitness: shifting by subtraction and mu of normal distribution. |
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- simOGraph: using proper transitive reduction. |
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- - Citation shows Bioinformatics paper. |
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+ - simOGraph can also output rT data frames. |
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+ - accessible genotypes now done in C++. |
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- Handling of trivial cases in genotFitness. |
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- Clarified McFarland parameterization. |
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- Better (and better explained) estimates of simulation error for McFL. |
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- AND of detectedSizeP and lastMaxDr. |
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- - fixation of a genotype/gene as stopping mechanism. |
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- sampledGenotypes in user code. |
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- clonePhylog et al: deal with never any descendant. |
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- samplePop can handle failed simulations graciously. |
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- - accessible genotypes now done in C++. |
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- - simOGraph can also output rT data frames. |
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- - clonePhylog et al: deal with never any descendant. |
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- - samplePop can handle failed simulations graciously. |
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- summary.oncosimulpop can handle failed simulations graciously. |
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+ - Citation shows Bioinformatics paper. |
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+ |
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+Changes in version 2.5.14 (2017-04-07): |
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+ - Fixed repeated entries in NEWS for BioC 3.5. |
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Changes in version 2.5.13 (2017-04-07): |
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- Updated NEWS for BioC 3.5. |