Browse code

2.99.5

ramon diaz-uriarte (at Phelsuma) authored on 18/12/2020 22:20:58
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 Package: OncoSimulR
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 Type: Package
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 Title: Forward Genetic Simulation of Cancer Progression with Epistasis 
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-Version: 2.99.4
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-Date: 2020-12-17
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+Version: 2.99.5
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+Date: 2020-12-18
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 Authors@R: c(
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 	      person("Ramon", "Diaz-Uriarte", role = c("aut", "cre"),	
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  	   		     email = "rdiaz02@gmail.com"),
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+Changes in version 2.99.5 (2020-12-18):
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+	- Random timeouts when building in tokay2 (Windows, BioC); fixing
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+	seed in vignette.
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+
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 Changes in version 2.99.4 (2020-12-17):
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+	- Clean up of C++ code.	
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+
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+Changes in version 2.99.3 (2020-12-13):
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 	- Remove unnecessary (and cluttering) output and irrelevant
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 	warnings when running tests.
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 	- Decrease execution time of longer running examples in man (Rd) files.
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 	- Decrease time of vignette.
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-	- Clean up of C++ code.
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 Changes in version 2.99.2 (2020-12-11):
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 	- Failed on test on Mac.
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@@ -503,7 +503,7 @@ d1 <- samplePop(s1, timeSample = "unif", propError = 0.1)
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 ```
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 ```{r hidden-rng-exochs, echo = FALSE}
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-set.seed(NULL)
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+## set.seed(NULL)
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 ```
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@@ -585,7 +585,7 @@ sampledGenotypes(samplePop(od_sim))
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 ```
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 ```{r hidden-rng-exochs33, echo = FALSE}
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-set.seed(NULL)
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+## set.seed(NULL)
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 ```
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 ### Predictability of evolution in complex fitness landscapes {#ex-predict}
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 ```
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 ```{r hidden-rng-exszend, echo = FALSE}
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-set.seed(NULL)
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+## set.seed(NULL)
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 ```
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@@ -749,7 +749,7 @@ unlist(lapply(st, function(x) x$FinalTime))
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 ```
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 ```{r hidden-rng-tom, echo = FALSE}
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-set.seed(NULL)
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+## set.seed(NULL)
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 ```
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@@ -832,7 +832,7 @@ sum(summary(sb1)[, "TotalPopSize"] > (4 * initSize))/totalpops
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 ```
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 ```{r hidden-rng-exbau, echo = FALSE}
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-set.seed(NULL)
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+## set.seed(NULL)
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 ```
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@@ -863,7 +863,7 @@ unlist(lapply(sb2, function(x) x$FinalTime))
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 ```
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 ```{r hidden-rng-exbau22, echo = FALSE}
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-set.seed(NULL)
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+## set.seed(NULL)
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 ```
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 #### Consequences of order effects for cancer initiation {#exorder1intro}
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 ```
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 ```{r hidden-rng-exoef, echo = FALSE}
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-set.seed(NULL)
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+## set.seed(NULL)
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 ```
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@@ -13233,7 +13233,7 @@ st <- oncoSimulPop(4, ft, muEF = mt,
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                    keepEvery = NA, 
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                    mc.cores = 2, ## adapt to your hardware
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                    seed = NULL) ## for reproducibility
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-set.seed(NULL) ## return things to their "usual state"
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+## set.seed(NULL) ## return things to their "usual state"
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 ```
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