// Copyright 2013, 2014, 2015, 2016 Ramon Diaz-Uriarte // This program is free software: you can redistribute it and/or modify // it under the terms of the GNU General Public License as published by // the Free Software Foundation, either version 3 of the License, or // (at your option) any later version. // This program is distributed in the hope that it will be useful, // but WITHOUT ANY WARRANTY; without even the implied warranty of // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the // GNU General Public License for more details. // You should have received a copy of the GNU General Public License // along with this program. If not, see <http://www.gnu.org/licenses/>. #ifndef _COMMON_CLS_H_ #define _COMMON_CLS_H_ #include<Rcpp.h> // Simple custom exception for exceptions that lead to re-runs. class rerunExcept: public std::runtime_error { public: rerunExcept(const std::string &s) : std::runtime_error(s) {} }; enum class TypeModel {exp, bozic1, mcfarlandlog}; struct spParamsP { double popSize; double birth; double death; double W; double R; double mutation; double timeLastUpdate; std::multimap<double, int>::iterator pv; double absfitness; //convenient for Beerenwinkel int numMutablePos; //for mutator if need update of mutation }; #endif