1. OmnipathR
  2. .gitignore
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log directory to gitignore

Türei Dénes authored on 10/02/2021 16:35:20
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.gitignore
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@@ -39,3 +39,5 @@ vignettes/OmnipathR.toc
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 bioctest/
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 # bioconductor testing R environment
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 Renviron.bioc
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+# Log directory
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+omnipathr-log/
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Renviron.bioc into Rbuildignore and gitignore

Türei Dénes authored on 05/10/2020 00:08:44
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.gitignore
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@@ -37,3 +37,5 @@ vignettes/OmnipathR.tex
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 vignettes/OmnipathR.toc
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 # bioconductor release test directory
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 bioctest/
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+# bioconductor testing R environment
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+Renviron.bioc
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bioc test dir into Rbuildignore and gitignore

Türei Dénes authored on 05/10/2020 00:04:10
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@@ -34,4 +34,6 @@ vignettes/OmnipathR.bbl
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 vignettes/OmnipathR.log
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 vignettes/OmnipathR.synctex.gz
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 vignettes/OmnipathR.tex
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-vignettes/OmnipathR.toc
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\ No newline at end of file
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+vignettes/OmnipathR.toc
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+# bioconductor release test directory
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+bioctest/
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Minor Update website

Alberto Valdeolivas authored on 29/07/2020 15:33:35
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@@ -34,4 +34,4 @@ vignettes/OmnipathR.bbl
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 vignettes/OmnipathR.log
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 vignettes/OmnipathR.synctex.gz
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 vignettes/OmnipathR.tex
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-vignettes/OmnipathR.toc
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+vignettes/OmnipathR.toc
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\ No newline at end of file
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Website

Alberto Valdeolivas authored on 05/06/2020 08:00:28
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@@ -35,4 +35,3 @@ vignettes/OmnipathR.log
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 vignettes/OmnipathR.synctex.gz
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 vignettes/OmnipathR.tex
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 vignettes/OmnipathR.toc
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-docs
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Website

Alberto Valdeolivas authored on 18/05/2020 08:24:42
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@@ -35,3 +35,4 @@ vignettes/OmnipathR.log
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 vignettes/OmnipathR.synctex.gz
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 vignettes/OmnipathR.tex
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 vignettes/OmnipathR.toc
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+docs
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Modifications Bioconductor Final submission

Modifications to address the comments and modifications proposed by a member of the Bioconductor core team (Last submission stage):

https://github.com/Bioconductor/Contributions/issues/1263

Alberto Valdeolivas authored on 14/10/2019 17:15:14
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.gitignore
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@@ -29,3 +29,9 @@ rsconnect/
29 29 
 .Rproj.user
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 OmnipathR.Rproj
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 OmnipathR.Rproj
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+vignettes/OmnipathR-concordance.tex
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+vignettes/OmnipathR.bbl
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+vignettes/OmnipathR.log
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+vignettes/OmnipathR.synctex.gz
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+vignettes/OmnipathR.tex
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+vignettes/OmnipathR.toc
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Preparation for Bioconductor Submission

- New more robustic functions to query Omnipath webservice following Bioconductor recommendations.

- New testing funcitons using the package testthat and following Bioconductor recommendations.

- Coding style modifications to meet Bioconductor recommendations and requirements.

Alberto Valdeolivas authored on 17/09/2019 15:10:42
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@@ -27,3 +27,5 @@ vignettes/*.pdf
27 27 
 # Shiny token, see https://shiny.rstudio.com/articles/shinyapps.html
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 rsconnect/
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 .Rproj.user
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+OmnipathR.Rproj
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+OmnipathR.Rproj
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dplyr required

gabora authored on 21/05/2019 06:52:04
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@@ -1,37 +1,29 @@
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+inst/doc
1 2 
 # History files
2 3 
 .Rhistory
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 .Rapp.history
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5 6 
 # Session Data files
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 .RData
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-
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 # Example code in package build process
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 *-Ex.R
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-
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 # Output files from R CMD build
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 /*.tar.gz
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-
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 # Output files from R CMD check
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 /*.Rcheck/
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-
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 # RStudio files
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 .Rproj.user/
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-
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 # produced vignettes
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 vignettes/*.html
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 vignettes/*.pdf
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-
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 # OAuth2 token, see https://github.com/hadley/httr/releases/tag/v0.3
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 .httr-oauth
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-
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 # knitr and R markdown default cache directories
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 /*_cache/
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 /cache/
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-
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 # Temporary files created by R markdown
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 *.utf8.md
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 *.knit.md
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-
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 # Shiny token, see https://shiny.rstudio.com/articles/shinyapps.html
36 28 
 rsconnect/
37 29 
 .Rproj.user
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ptms and interactions have difference graph conveersion algorithm, fixed issues related to this

gabora authored on 12/11/2018 09:54:43
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 # Shiny token, see https://shiny.rstudio.com/articles/shinyapps.html
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 rsconnect/
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+.Rproj.user
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Initial commit

Attila Gabor authored on 09/11/2018 16:13:51 • GitHub committed on 09/11/2018 16:13:51
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new file mode 100644
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+# History files
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+.Rhistory
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+.Rapp.history
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+
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+# Session Data files
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+.RData
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+
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+# Example code in package build process
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+*-Ex.R
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+
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+# Output files from R CMD build
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+/*.tar.gz
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+
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+# Output files from R CMD check
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+/*.Rcheck/
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+
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+# RStudio files
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+.Rproj.user/
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+
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+# produced vignettes
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+vignettes/*.html
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+vignettes/*.pdf
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+
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+# OAuth2 token, see https://github.com/hadley/httr/releases/tag/v0.3
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+.httr-oauth
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+
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+# knitr and R markdown default cache directories
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+/*_cache/
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+/cache/
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+
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+# Temporary files created by R markdown
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+*.utf8.md
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+*.knit.md
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+
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+# Shiny token, see https://shiny.rstudio.com/articles/shinyapps.html
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+rsconnect/