Name Mode Size
R 040000
data 040000
inst 040000
man-roxygen 040000
man 040000
tests 040000
vignettes 040000
.Rbuildignore 100644 0 kb
.gitignore 100644 0 kb
DESCRIPTION 100644 1 kb 100644 34 kb
NAMESPACE 100644 1 kb
NEWS 100644 2 kb 100644 2 kb
install.R 100644 0 kb
manuscript_examples.ipynb 100644 452 kb
omadb.Rproj 100644 0 kb
runtime.txt 100644 0 kb
# OmaDB: R wrapper for the OMA REST API R package providing access to the data in the OMA browser, using the REST API. As such, it requires a stable internet connection to operate. We also provide a similar _wrapper for python ( An notebook containing examples of how to use the package is available <a href="">here</a>. [![Binder](]( ## Citation If you use our package in your work, please consider citing: _Kaleb K, Warwick Vesztrocy A, Altenhoff A and Dessimoz C. Expanding the Orthologous Matrix (OMA) programmatic interfaces: REST API and the OmaDB packages for R and Python. F1000Research 2019, 8:42 ( ## Installation The package is available via Bioconductor ( and can be installed as follows: ``` if (!requireNamespace("BiocManager")) install.packages("BiocManager") BiocManager::install('OmaDB') #load the package library(OmaDB) ``` Note that the v2.0 of the package requires R version >= 3.6 and Bioconductor version >=3.9. The latest version of the OmaDB package can also be directly installed from the github repository as below: ``` install.packages('devtools') library(devtools) install_github('dessimozlab/omadb') ``` ## License OmaDB is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. OmaDB is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. You should have received a copy of the GNU Lesser General Public License along with OmaDB. If not, see <>.