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  • cf0c3c7 (origin/RELEASE_3_16, RELEASE_3_16) Bump version to trigger rebuild and propagation of new Mac binary by J Wokaty <jwokaty@users.noreply.github.com> 2023-01-19 11:17:43 -0500;
  • a63f5ee (HEAD -> master, origin/master, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:09:39 -0400;
  • 15b6290 bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:09:39 -0400;
  • f0f441c bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:19:39 +0000;
  • 42c5764 (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:19:39 +0000;
  • 837bdc9 bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:13:29 +0000;
  • 087bcbc (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:13:29 +0000;
  • 6cc4fcf bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:04:54 +0000;
  • a0182f7 (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:04:54 +0000;
  • 8453f82 bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 10:56:36 -0400;
  • 57dbe8c (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 10:56:36 -0400;
  • 7bf4b28 bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:40:20 +0000;
  • fd970b9 (origin/RELEASE_3_11, RELEASE_3_11) bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:40:20 +0000;
  • df342e5 bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:37:30 -0400;
  • c6d0baa (origin/RELEASE_3_10) bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:08:57 -0400;
  • bcb39c6 bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 12:11:35 -0400;
  • 88f51c0 (origin/RELEASE_3_9, RELEASE_3_9) bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 11:53:47 -0400;
  • 666f2f7 address rd warnings by Ahmed Mohamed <mohamed@kuicr.kyoto-u.ac.jp> 2019-04-03 07:32:19 +1000;
  • d9a6bba Vignette title correction by Ahmed Mohamed <mohamed@kuicr.kyoto-u.ac.jp> 2019-04-01 16:41:42 +1000;
  • 2ba3782 .Rbuildignore by Ahmed Mohamed <mohamed@kuicr.kyoto-u.ac.jp> 2019-03-05 09:13:14 +1000;
  • 6122560 version pump by Ahmed Mohamed <mohamed@kuicr.kyoto-u.ac.jp> 2019-03-05 08:03:56 +1000;
  • 7d57d03 replace rand with unif_rand by Ahmed Mohamed <mohamed@kuicr.kyoto-u.ac.jp> 2019-03-04 17:33:39 +1000;
  • b90e6c1 few README typos by Ahmed Mohamed <mohamed@kuicr.kyoto-u.ac.jp> 2019-03-04 15:17:46 +1000;
  • e8081e5 version pump by Ahmed Mohamed <mohamed@kuicr.kyoto-u.ac.jp> 2019-03-03 02:21:37 +1000;
  • e8bce05 fix mac locate.database warning by Ahmed Mohamed <mohamed@kuicr.kyoto-u.ac.jp> 2019-03-02 23:31:31 +1000;
  • 86f6a92 Merge branch 'master' into travis_ci by Ahmed Mohamed <mohamed@kuicr.kyoto-u.ac.jp> 2019-03-02 22:45:08 +1000;
  • 34acd8d README typos by Ahmed Mohamed <mohamed@kuicr.kyoto-u.ac.jp> 2019-03-02 22:44:38 +1000;
  • 19e3925 Fix a typo by Ahmed Mohamed <mohamed@kuicr.kyoto-u.ac.jp> 2019-03-02 22:28:26 +1000;
  • f08aad8 Switch to Rmd vignette by Ahmed Mohamed <mohamed@kuicr.kyoto-u.ac.jp> 2019-03-02 19:00:17 +1000;
  • 262e3fa install libSBML into usr/local: permission issue on OSX build by Ahmed Mohamed <mohamed@kuicr.kyoto-u.ac.jp> 2019-03-02 13:25:31 +1000;
  • 5cff888 try testing bioc-release on OSX by Ahmed Mohamed <mohamed@kuicr.kyoto-u.ac.jp> 2019-03-02 13:12:54 +1000;
  • 2452493 requireNameSpace accepts strings only by Ahmed Mohamed <mohamed@kuicr.kyoto-u.ac.jp> 2019-03-02 12:13:05 +1000;
  • 5741dd3 Use requireNameSpace instead of require by Ahmed Mohamed <mohamed@kuicr.kyoto-u.ac.jp> 2019-03-02 11:50:37 +1000;
  • e72b868 Allow failures on OSX until travisCI issue resolved by Ahmed Mohamed <mohamed@kuicr.kyoto-u.ac.jp> 2019-03-02 11:50:06 +1000;
  • b37941b travisCI multiOS by Ahmed Mohamed <mohamed@kuicr.kyoto-u.ac.jp> 2019-03-02 11:28:34 +1000;
  • 8bb7ef5 Fix deprecated operators in igraph. by Ahmed Mohamed <mohamed@kuicr.kyoto-u.ac.jp> 2019-03-01 22:53:03 +1000;
  • 9491021 isnan ==> std::isnan: fixes c++11 bug by Ahmed Mohamed <mohamed@kuicr.kyoto-u.ac.jp> 2019-03-01 22:24:48 +1000;
  • 483872b Use new travisCI directives by Ahmed Mohamed <mohamed@kuicr.kyoto-u.ac.jp> 2019-03-01 16:32:37 +1000;
  • 62534d4 NEWS update, version pump 1.19.1 by Ahmed Mohamed <mohamed@kuicr.kyoto-u.ac.jp> 2019-03-01 16:32:08 +1000;
  • 087265c Docs update 1.19 by Ahmed Mohamed <mohamed@kuicr.kyoto-u.ac.jp> 2019-03-01 16:31:42 +1000;
  • 6d8dbd3 reindexNetwork function by Ahmed Mohamed <mohamed@kuicr.kyoto-u.ac.jp> 2019-03-01 15:51:23 +1000;
  • 11faa4d makeMetaboliteNetwork function by Ahmed Mohamed <mohamed@kuicr.kyoto-u.ac.jp> 2019-03-01 14:54:33 +1000;
  • ce462c0 disable GCC and clang unused-local-typedef in boost headers by Ahmed Mohamed <mohamed@kuicr.kyoto-u.ac.jp> 2019-03-01 11:57:05 +1000;
  • becaeaa rmSmallCompounds fix. Add CHEBI: prefix to small.comp.ls by Ahmed Mohamed <mohamed@kuicr.kyoto-u.ac.jp> 2019-03-01 11:56:06 +1000;
  • d0393ae Trim whitespaces by Ahmed Mohamed <mohamed@kuicr.kyoto-u.ac.jp> 2019-02-28 17:27:19 +1000;
  • ccc19d1 Various bug fixes by Ahmed Mohamed <mohamed@kuicr.kyoto-u.ac.jp> 2019-02-28 17:14:36 +1000;
  • 712864a Merge remote-tracking branch 'upstream/master' by Ahmed Mohamed <mohamed@kuicr.kyoto-u.ac.jp> 2019-02-28 15:55:37 +1000;
  • 3eb8fb5 bump x.y.z versions to odd y after creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:54:32 -0400;
  • 8afb807 (origin/RELEASE_3_8, RELEASE_3_8) bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:41:54 -0400;
  • 9008fe3 replace BiocInstaller biocLite mentions with BiocManager by LiNk-NY <mramos09@gmail.com> 2018-08-30 13:53:13 -0400;
  • 4229d59 bump x.y.z versions to odd y after creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:41:40 -0400;
  • 8eabe3f (origin/RELEASE_3_7, RELEASE_3_7) bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:35:33 -0400;
  • 95afaeb bump x.y.z versions to odd y after creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:53:11 -0400;
  • 5cb075f (origin/RELEASE_3_6, RELEASE_3_6) bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:40:15 -0400;
  • fd69eef trigger retest by ahmohamed <ahmohamed@user.noreply.github.com> 2017-10-22 01:47:33 +1000;
  • 766ed77 fix deprecated as_graphnel by Ahmed Mohamed <mohamed@kuicr.kyoto-u.ac.jp> 2017-08-15 01:58:15 +0000;
  • b0e2010 fix deprecated as_graphnel by ahmohamed <ahmohamed@user.noreply.github.com> 2017-08-15 11:56:47 +1000;
  • c20c428 (origin/RELEASE_3_5, RELEASE_3_5) Bump version in order to propagate new Mac binary by Herve Pages <hpages@fhcrc.org> 2017-05-05 19:32:27 +0000;
  • 22c1bea bump x.y.z versions to odd y after creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:50:57 +0000;
  • 727053d Creating branch for BioC 3.5 release by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:45:44 +0000;
  • 844a0f2 bump x.y.z versions to even y prior to creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:25:24 +0000;
  • f072bbb bump x.y.z versions to odd 'y' after creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:10:43 +0000;
  • 60704a6 (origin/RELEASE_3_4, RELEASE_3_4) Creating branch for BioC 3.4 release by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:00:47 +0000;
  • 983ec9c bump x.y.z versions to even 'y' prior to creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 18:45:06 +0000;
  • 1562b1a revert igraph-update commits by Ahmed Mohamed <mohamed@kuicr.kyoto-u.ac.jp> 2016-09-21 16:37:24 +0000;
  • 756572c Revert "igraph deprecated from & to functions" by ahmohamed <ahmohamed@user.noreply.github.com> 2016-09-21 19:35:30 +0300;
  • 50fa88d Revert "igraph .nei fix" by ahmohamed <ahmohamed@user.noreply.github.com> 2016-09-21 19:35:21 +0300;
  • 533cfec README code highlight by Ahmed Mohamed <mohamed@kuicr.kyoto-u.ac.jp> 2016-09-20 01:13:52 +0200;
  • 96c95b0 autoconf modification to not require the installation dir named NetPathMiner by ahmohamed <ahmohamed@user.noreply.github.com> 2016-09-20 02:04:03 +0300;
  • e561e5f remove RCytoscape dependency by Ahmed Mohamed <mohamed@kuicr.kyoto-u.ac.jp> 2016-09-19 08:48:17 +0000;
  • d4a7216 restore non-linux support by ahmohamed <ahmohamed@user.noreply.github.com> 2016-09-19 11:47:30 +0300;
  • 09b2331 igraph .nei fix by ahmohamed <ahmohamed@user.noreply.github.com> 2016-09-19 06:52:51 +0300;
  • f5e6fc6 igraph deprecated from & to functions by ahmohamed <ahmohamed@user.noreply.github.com> 2016-09-19 06:35:36 +0300;
  • a138c5d plotCytoscapeGML roxygen by ahmohamed <ahmohamed@user.noreply.github.com> 2016-09-19 06:05:48 +0300;
  • 6d78e9d plotCytoscapeGML example fix by ahmohamed <ahmohamed@user.noreply.github.com> 2016-09-19 05:39:23 +0300;
  • 2aadfaf update docs using roxygen2 by ahmohamed <ahmohamed@user.noreply.github.com> 2016-09-19 05:16:33 +0300;
  • da5da9a Remove RCytoscape dependency by ahmohamed <ahmohamed@user.noreply.github.com> 2016-09-19 05:16:13 +0300;
  • 1567e1c update to match Bioc version by ahmohamed <ahmohamed@user.noreply.github.com> 2016-09-19 02:51:43 +0300;
  • 3fdf079 BUGFIX: include libxml2 correctly when libSBML is not present by ahmohamed <ahmohamed@user.noreply.github.com> 2016-09-18 20:02:39 +0300;
  • 83dd0da mark as unsupported on non-linux (like RCytoscape which NetPathMiner suggests) by Herve Pages <hpages@fhcrc.org> 2016-09-11 21:37:30 +0000;
  • 8baeb3e bump version after creating 3.3 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:30:44 +0000;
  • df759fc (origin/RELEASE_3_3, RELEASE_3_3) Creating branch for BioC 3.3 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:26:31 +0000;
  • 7c9ac5a Bump versions prior to creation of 3.3 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:20:18 +0000;
  • a898daf Bumped version number of all packages after creation of 3.2 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:59:53 +0000;
  • a84e42a (origin/RELEASE_3_2, RELEASE_3_2) Creating branch for BioC 3.2 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:57:33 +0000;
  • ffa50d1 Bumped versions of all packages prior to creating 3.2 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:36:05 +0000;
  • 5b8ea8b Added travis shield by Ahmed Mohamed <mohamed@kuicr.kyoto-u.ac.jp> 2015-07-04 13:48:14 +0900;
  • bb7fdbd Merge pull request <a href="#7">#7</a> from ahmohamed/travis-ci_test by Ahmed Mohamed <mohamed@kuicr.kyoto-u.ac.jp> 2015-07-04 13:47:19 +0900;
  • 17bc3ee sudo rm by Ahmed Mohamed <mohamed@kuicr.kyoto-u.ac.jp> 2015-07-04 13:12:55 +0900;
  • 21c2acf removing libsbml source before build by Ahmed Mohamed <mohamed@kuicr.kyoto-u.ac.jp> 2015-07-04 13:03:38 +0900;
  • 9a57862 Reduce verbosity- fix libsbml install by Ahmed Mohamed <mohamed@kuicr.kyoto-u.ac.jp> 2015-07-04 12:27:12 +0900;
  • bab6341 install libsbml from source by Ahmed Mohamed <mohamed@kuicr.kyoto-u.ac.jp> 2015-07-04 11:49:55 +0900;
  • d6db89d corrected igraph github repo by Ahmed Mohamed <mohamed@kuicr.kyoto-u.ac.jp> 2015-07-04 11:07:54 +0900;
  • 7b68a64 rename libsbml.deb by Ahmed Mohamed <mohamed@kuicr.kyoto-u.ac.jp> 2015-07-04 10:59:51 +0900;
  • c4e30f4 yml fix2 by Ahmed Mohamed <mohamed@kuicr.kyoto-u.ac.jp> 2015-07-04 10:48:45 +0900;
  • 37e8c62 yml fix by Ahmed Mohamed <mohamed@kuicr.kyoto-u.ac.jp> 2015-07-04 10:47:34 +0900;
  • 4cded70 libsbml.deb before_install by Ahmed Mohamed <mohamed@kuicr.kyoto-u.ac.jp> 2015-07-04 10:44:33 +0900;
  • a3d67aa libsbml using apt-get by Ahmed Mohamed <mohamed@kuicr.kyoto-u.ac.jp> 2015-07-04 10:31:37 +0900;
  • 995b940 travis.yml push by Ahmed Mohamed <mohamed@kuicr.kyoto-u.ac.jp> 2015-07-04 10:18:18 +0900;
  • 555ec75 empty commit by Ahmed Mohamed <mohamed@kuicr.kyoto-u.ac.jp> 2015-07-04 09:36:26 +0900;