Package: NetPathMiner

 Version: 1.20.0

 Date: 2014 onwards
 Title: NetPathMiner for Biological Network Construction, Path Mining

     and Visualization

 Author: Ahmed Mohamed <mohamed@kuicr.kyoto-u.ac.jp>, Tim Hancock

     <timothy.hancock@kuicr.kyoto-u.ac.jp>, Ichigaku Takigawa
     <takigawa@kuicr.kyoto-u.ac.jp>, Nicolas Wicker
     <nicolas.wicker@unistra.fr>

 Maintainer: Ahmed Mohamed <mohamed@kuicr.kyoto-u.ac.jp>
 Description: NetPathMiner is a general framework for network path

     mining using genome-scale networks. It constructs networks from
     KGML, SBML and BioPAX files, providing three network
     representations, metabolic, reaction and gene representations.
     NetPathMiner finds active paths and applies machine learning
     methods to summarize found paths for easy interpretation. It
     also provides static and interactive visualizations of networks
     and paths to aid manual investigation.
 Depends:
     R (>= 3.0.2),

     igraph (>= 1.0)

 Suggests:
     rBiopaxParser (>= 2.1),
     RCurl,

     graph,
     knitr, rmarkdown, BiocStyle
 VignetteBuilder: knitr

 License: GPL (>= 2)
 URL: https://github.com/ahmohamed/NetPathMiner
 NeedsCompilation: yes
 SystemRequirements: libxml2, libSBML (>= 5.5)
 Biarch: TRUE
 biocViews: GraphAndNetwork, Pathways, Network, Clustering,
     Classification

 RoxygenNote: 6.1.1
 Encoding: UTF-8