0d73b51 (HEAD -> devel, origin/master, origin/devel, origin/HEAD) Merge pull request <a href="#40">#40</a> from rformassspectrometry/jomain by
Johannes Rainer <5506112+jorainer@users.noreply.github.com>2023-12-07 12:40:07 +0100;
725f180 ci: install MsBackendSql dev version by
jorainer <johannes.rainer@gmail.com>2023-12-07 09:16:22 +0100;
1a08091 ci: only run unit test on push by
jorainer <johannes.rainer@gmail.com>2023-12-07 08:36:39 +0100;
7c97f37 docs: use recent version of MsBackendSql to simplify vignette by
jorainer <johannes.rainer@gmail.com>2023-12-07 08:28:16 +0100;
7069746 ci: use R devel for macOS and windows by
jorainer <johannes.rainer@gmail.com>2023-12-04 10:34:26 +0100;
7438e31 docs: update documentation and add section to vignette by
jorainer <johannes.rainer@gmail.com>2023-11-02 16:36:56 +0100;
19a28d5 docs: fix documentation by
jorainer <johannes.rainer@gmail.com>2023-10-31 16:20:18 +0100;
9e2faac feat: add functionality to get sample data from SQL by
jorainer <johannes.rainer@gmail.com>2023-10-31 15:57:27 +0100;
eee276a Merge pull request <a href="#38">#38</a> from rformassspectrometry/jomain by
Johannes Rainer <5506112+jorainer@users.noreply.github.com>2023-10-27 11:54:35 +0200;
8ad3f32 fix: fix subset with negative indices <a href="#37">#37</a> by
jorainer <johannes.rainer@gmail.com>2023-10-26 07:59:55 +0200;
92f50f2 bump x.y.z version to odd y following creation of RELEASE_3_18 branch by
J Wokaty <jennifer.wokaty@sph.cuny.edu>2023-10-24 11:44:13 -0400;
e92dde5 (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by
J Wokaty <jennifer.wokaty@sph.cuny.edu>2023-10-24 11:44:13 -0400;
1ee184a bump x.y.z version to odd y following creation of RELEASE_3_17 branch by
J Wokaty <jwokaty@users.noreply.github.com>2023-04-25 11:40:15 -0400;
14d0c19 (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by
J Wokaty <jwokaty@users.noreply.github.com>2023-04-25 11:40:15 -0400;
0fbcd03 Merge pull request <a href="#36">#36</a> from rformassspectrometry/lgmain by
Laurent Gatto <laurent.gatto@gmail.com>2023-04-20 14:31:45 +0200;
4ace8bc tests: add unit tests by
Laurent Gatto <laurent.gatto@uclouvain.be>2023-04-19 14:19:29 +0200;
e73e995 fix/improve show and new otherData get/set functions by
lgatto <laurent.gatto@gmail.com>2023-04-18 09:15:33 +0200;
3417b8c docs: update README by
jorainer <johannes.rainer@gmail.com>2023-04-13 10:41:53 +0200;
ff34a42 ci: fix branch names by
jorainer <johannes.rainer@gmail.com>2023-04-13 10:03:27 +0200;
754bb74 Update readme by
jorainer <johannes.rainer@gmail.com>2023-04-05 08:01:41 +0200;
289a757 ci: remove codecov badge by
jorainer <johannes.rainer@gmail.com>2023-03-15 10:41:34 +0100;
2386a2d docs: use devel branch for the codecov badge by
jorainer <johannes.rainer@gmail.com>2023-03-15 09:53:26 +0100;
34e25bc ci: fix branch names by
jorainer <johannes.rainer@gmail.com>2023-03-10 08:22:35 +0100;
01e1671 Merge pull request <a href="#35">#35</a> from rformassspectrometry/jomain by
Johannes Rainer <5506112+jorainer@users.noreply.github.com>2023-03-02 11:27:31 +0100;
263fedd fix: unit test for readMsExperiment (issue #34) by
jorainer <johannes.rainer@gmail.com>2023-03-02 08:23:41 +0100;
5b34404 Merge pull request <a href="#33">#33</a> from rformassspectrometry/jomain by
Johannes Rainer <5506112+jorainer@users.noreply.github.com>2023-02-13 13:35:50 +0100;
23df0ac Update NEWS.md by
Johannes Rainer <5506112+jorainer@users.noreply.github.com>2023-02-13 11:00:47 +0100;
70d8c0d refactor: rename parameter files to spectraFiles by
jorainer <johannes.rainer@gmail.com>2023-01-09 15:13:09 +0100;
43f9c02 Merge pull request <a href="#31">#31</a> from rformassspectrometry/jomain by
Johannes Rainer <5506112+jorainer@users.noreply.github.com>2022-11-30 12:14:38 +0100;
3fcdbb9 refactor: adapt to Sebastian's comments by
jorainer <johannes.rainer@gmail.com>2022-11-30 09:35:15 +0100;
03248fa Update NEWS.md by
Johannes Rainer <5506112+jorainer@users.noreply.github.com>2022-11-30 07:56:02 +0100;
4a496fe refactor: use S4Vectors::findMatches instead of grr::matches by
jorainer <johannes.rainer@gmail.com>2022-11-28 16:19:00 +0100;
99fe8a4 refactor: use grr::matches do match data to samples by
jorainer <johannes.rainer@gmail.com>2022-11-15 14:59:21 +0100;
2118964 ci: use R devel and BioC 3.17 by
jorainer <johannes.rainer@gmail.com>2022-11-15 14:06:34 +0100;
af32754 Merge branch 'master' by
jorainer <johannes.rainer@gmail.com>2022-11-15 14:03:46 +0100;
339f193 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by
J Wokaty <jennifer.wokaty@sph.cuny.edu>2022-11-01 11:27:33 -0400;
605b25f (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by
J Wokaty <jennifer.wokaty@sph.cuny.edu>2022-11-01 11:27:33 -0400;
4fd4c32 refactor: import spectra<- from ProtGenerics by
jorainer <johannes.rainer@gmail.com>2022-10-17 17:25:18 +0200;
74e7cfc fix: default value for experimentFiles slot by
jorainer <johannes.rainer@gmail.com>2022-10-13 16:36:10 +0200;
49ce723 Merge pull request <a href="#28">#28</a> from rformassspectrometry/jomain by
Laurent Gatto <laurent.gatto@gmail.com>2022-09-16 14:05:27 +0200;
aac4a2b Merge remote-tracking branch 'origin/jomain' into jomain by
jorainer <johannes.rainer@gmail.com>2022-09-16 12:19:24 +0200;
4887405 fix: add unit tests for subsetting by
jorainer <johannes.rainer@gmail.com>2022-09-16 12:18:24 +0200;
73ad222 Merge pull request <a href="#29">#29</a> from rformassspectrometry/lgmain by
Johannes Rainer <5506112+jorainer@users.noreply.github.com>2022-09-16 11:55:37 +0200;
1232f28 fix: remove MsExperimentFiles_OR_Null class union by
lgatto <laurent.gatto@gmail.com>2022-09-16 11:48:01 +0200;
f1d3376 fix: use one-dimenasional subsetting by
jorainer <johannes.rainer@gmail.com>2022-09-15 17:01:47 +0200;
c62d03c Fix some more issues from the review by
jorainer <johannes.rainer@gmail.com>2022-09-15 15:11:01 +0200;
c59fc8e Address first reviewer comments by
jorainer <johannes.rainer@gmail.com>2022-09-15 14:46:45 +0200;
9e5f852 refact: name all code chunks in vignette by
Laurent Gatto <laurent.gatto@uclouvain.be>2022-08-10 17:50:20 +0200;
ef5358f Merge pull request <a href="#27">#27</a> from rformassspectrometry/jomain by
Johannes Rainer <5506112+jorainer@users.noreply.github.com>2022-07-06 11:17:58 +0200;
f644cf2 ci: use R 4.2 on Windows by
jorainer <johannes.rainer@gmail.com>2022-06-27 10:01:06 +0200;
865c124 ci: use R 4.1 and BioC 3.15 on Windows by
jorainer <johannes.rainer@gmail.com>2022-06-27 09:52:38 +0200;
522faf0 Merge branch 'main' into jomain by
jorainer <johannes.rainer@gmail.com>2022-06-27 08:46:14 +0200;
1d88688 refactor: address Laurent's comments and add unit tests by
jorainer <johannes.rainer@gmail.com>2022-06-27 08:32:32 +0200;
5b73ce6 ci: disable windows by
jorainer <johannes.rainer@gmail.com>2022-06-02 13:22:00 +0200;
4e1a1a9 ci: use BioC 3.15 by
jorainer <johannes.rainer@gmail.com>2022-06-02 11:18:26 +0200;
47742dc ci: fix wrong Bioconductor version by
jorainer <johannes.rainer@gmail.com>2022-06-02 10:07:16 +0200;
2c7dfdd ci: use R 4.1 on Windows by
jorainer <johannes.rainer@gmail.com>2022-06-02 10:01:39 +0200;
cb707e9 Merge branch 'main' into jomain by
jorainer <johannes.rainer@gmail.com>2022-06-02 10:01:08 +0200;
01f68a1 Update README.md by
Laurent Gatto <laurent.gatto@gmail.com>2022-06-01 22:14:34 +0200;
129351d fix: wrong slot assignment by
jorainer <johannes.rainer@gmail.com>2022-05-20 13:35:39 +0200;
ddac1eb ci: reduce installed software on mac by
jorainer <johannes.rainer@gmail.com>2022-05-20 12:10:48 +0200;
c66455d feat: add accessor for the assay slot (issue #26) by
jorainer <johannes.rainer@gmail.com>2022-05-20 11:50:26 +0200;
c8a3921 Merge branch 'main' into jomain by
jorainer <johannes.rainer@gmail.com>2022-05-20 11:33:34 +0200;
aaad078 docs: address BiocCheck complains by
jorainer <johannes.rainer@gmail.com>2022-05-04 14:27:10 +0200;
e92cca0 test: add unit tests for all functions (issue #24) by
jorainer <johannes.rainer@gmail.com>2022-05-04 13:20:36 +0200;
9622ed5 Merge pull request <a href="#25">#25</a> from rformassspectrometry/jomain by
Johannes Rainer <5506112+jorainer@users.noreply.github.com>2022-05-04 07:23:45 +0200;
2265333 ci: disable vignette building for dependencies by
jorainer <johannes.rainer@gmail.com>2022-05-03 16:19:38 +0200;
2aa8339 ci: force installation from source in first round by
jorainer <johannes.rainer@gmail.com>2022-05-03 15:53:59 +0200;
af41c0d ci: fix package name pdx to rpx by
jorainer <johannes.rainer@gmail.com>2022-05-03 15:41:34 +0200;
256003c ci: manually install pdx from github by
jorainer <johannes.rainer@gmail.com>2022-05-03 15:34:39 +0200;
b979aa7 ci: update to R 4.2 and BioC 3.16 and add fix for pkgdown by
jorainer <johannes.rainer@gmail.com>2022-05-03 15:20:13 +0200;
14ff3d8 fix: pkgdown url by
jorainer <johannes.rainer@gmail.com>2022-02-04 11:37:49 +0100;
ac74a24 Update README by
jorainer <johannes.rainer@gmail.com>2022-02-04 09:43:58 +0100;
551874c Merge pull request <a href="#23">#23</a> from lgatto/main by
Laurent Gatto <laurent.gatto@gmail.com>2021-05-27 15:38:36 +0200;
e10b960 add pkg logo by
Laurent Gatto <laurent.gatto@uclouvain.be>2021-05-27 15:37:30 +0200;
9a276a3 doc: rename 2nd mse by
lgatto <laurent.gatto@gmail.com>2021-05-09 13:24:32 +0200;
ace9b61 Merge branch 'main' of github.com:lgatto/MsExperiment into main by
lgatto <laurent.gatto@gmail.com>2021-05-08 13:59:30 +0200;
6501774 Merge branch 'rformassspectrometry:main' into main by
Laurent Gatto <laurent.gatto@gmail.com>2021-05-08 13:56:53 +0200;
446a3e8 Merge pull request <a href="#19">#19</a> from rformassspectrometry/jomain by
Laurent Gatto <laurent.gatto@gmail.com>2021-05-08 13:55:43 +0200;
6bd8936 docs: address Laurent's comments and suggestions by
jorainer <johannes.rainer@gmail.com>2021-05-07 08:17:52 +0200;
877f131 docs: eval first chunk (missed it previously) and explicitly load Spectra by
lgatto <laurent.gatto@gmail.com>2021-05-06 17:14:23 +0200;
750c6c6 docs: eval code chunks by
lgatto <laurent.gatto@gmail.com>2021-05-06 17:04:15 +0200;
86955d5 docs: rename ccl section by
lgatto <laurent.gatto@gmail.com>2021-05-06 16:34:30 +0200;
e6cc3ec docs: fix/improve class man page by
lgatto <laurent.gatto@gmail.com>2021-05-06 16:31:36 +0200;
fab4c64 refactor: make linkSampleData a simple function by
jorainer <johannes.rainer@gmail.com>2021-05-06 16:27:34 +0200;
9c5f6ca refactor: adapt to renaming qfeatures -> assay by
jorainer <johannes.rainer@gmail.com>2021-05-06 13:24:32 +0200;
62c50d0 Merge branch 'main' into jomain by
jorainer <johannes.rainer@gmail.com>2021-05-06 13:11:37 +0200;
00dc892 docs: add documentation and add content to vignette by
jorainer <johannes.rainer@gmail.com>2021-05-06 12:12:11 +0200;
89ed25d Merge branch 'main' of github.com:lgatto/MsExperiment into main by
lgatto <laurent.gatto@gmail.com>2021-05-05 15:45:28 +0200;
984106d refact: rename qfeatures slot to assay - close issue 21 by
lgatto <laurent.gatto@gmail.com>2021-05-05 15:00:01 +0200;
9558d7e refactor: move code to MsExperiment and drop LinkedMsExperiment by
jorainer <johannes.rainer@gmail.com>2021-05-05 11:50:18 +0200;
e6b43e3 Merge branch 'main' into jomain by
jorainer <johannes.rainer@gmail.com>2021-05-05 09:51:09 +0200;
e673f0e small fix in vignette by
jorainer <johannes.rainer@gmail.com>2021-05-05 09:46:16 +0200;
fb8b361 Merge pull request <a href="#1">#1</a> from lgatto/master by
Laurent Gatto <laurent.gatto@gmail.com>2021-05-04 17:40:30 +0200;
b209bf5 Merge pull request <a href="#20">#20</a> from lgatto/master by
Laurent Gatto <laurent.gatto@gmail.com>2021-05-04 17:36:17 +0200;
639d1d6 feat: qfeatures can now be NULL, a SummarizedExperiment or a QFeatures object by
Laurent Gatto <laurent.gatto@uclouvain.be>2021-05-04 17:35:05 +0200;
fc4113a docs: add section for sample linking to the vignette by
jorainer <johannes.rainer@gmail.com>2021-05-03 12:24:24 +0200;
b4d1494 feat: add subsetting functionality by
jorainer <johannes.rainer@gmail.com>2021-05-03 12:24:03 +0200;
6fb8a5f feat: add LinkedMsExperiment and required functions (issue #17) by
jorainer <johannes.rainer@gmail.com>2021-04-26 17:10:11 +0200;
