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# Managing mass spectrometry experiments [![Project Status: Active - The project has reached a stable, usable state and is being actively developed.](]( [![R-CMD-check-bioc](]( [![codecov](]( [![license](]( [![years in bioc](]( [![Ranking by downloads](]( [![build release](]( [![build devel](]( The `MsExperiment` package provides the `MsExperiment` class that can be used to store and manage all aspects related to a complete proteomics or metabolomics mass spectrometry experiment. This includes - experimental design - data files - raw data: spectra and chromatograms - proteomics identification results and protein database - quantitative features The respective data handling functionality is handled by dedicated packages such as `Spectra` for spectra data, `QFeatures` for quantitative features, `Biostrings` for fasta files, ... See the package [homepage]( for more information. This package is part of the RforMassSpectrometry initiative: # Installation The package can be installed with ```r install.packages("BiocManager") BiocManager::install("MsExperiment") ``` # Contributions Contributions are highly welcome and should follow the [contribution guidelines]( Also, please check the coding style guidelines in the [RforMassSpectrometry vignette](